Carya illinoinensis (pecan): 122316441
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Entry
122316441 CDS
T08745
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122316441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122316441
03036 Chromosome and associated proteins [BR:
cill03036
]
122316441
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
122316441
Coactivators
SAGA/TFTC/STAGA complex
122316441
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
122316441
STAGA complex
122316441
TFTC complex
122316441
SAGA complex
122316441
SLIK complex
122316441
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
NBCH_WD40
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
WD40_like
Beta-prop_DCAF12
Cytochrom_D1
PALB2_WD40
LisH
Motif
Other DBs
NCBI-GeneID:
122316441
NCBI-ProteinID:
XP_042988894
LinkDB
All DBs
Position
7:complement(43369842..43381781)
Genome browser
AA seq
684 aa
AA seq
DB search
MEEAQIEKFVAAYLKKKGFKQAEHAFQEELQQQQQQPSKNNSSSSISTNSLTDSDIAKHL
LTVSGLENGPAQYQDGYSKLRSWTYSSLDLYKHELLRVLYPVFIHCFMDLVEKGHIQEAR
TFFNSFREDHEMMHARDLQKLEGVLSPSHLEEMEFAHSLRQSKVKIKICQYSYELLLQFL
HKTKLTTMLGIVNEHINFQVSPGQPSSISDDAEVVTLIGSSQDEATLINQKEIHWGLLED
SLEERLEKGGVLLSDSEKADGEIKEGELDENKKRSIEGAKQGMPMKKLKKDKAVNATAKT
GRPEANTVSMAPRVKPELTLPVISTEVEKSILEDLRNRVQLSSVSLPSISFYTFINTHNG
LNCSSISHDGSLVAGGFSDSSLKIWDMAKLGQDAVGSVLQGENGTTSSEQFLGSNGGKRP
YTLFQGHSGPVYSATFSPLGDYLLSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSP
VGHYFASASHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIVTGSSDKTVRLWD
VQSGECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGAIMMWDLSSGRCVTPLMGHTSCVW
TLAFSCEGSLLASGSADCTVKLWDVNTSTKVPRTEENKGGSTNRLRSLKTLATKSTPVYS
LRFSRRNLLFAAGALSRSVDYSLH
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagctcagatagagaaattcgtggcagcgtacctgaagaaaaagggtttcaaa
caggccgagcatgcattccaagaagaactacagcagcagcaacaacaaccgagcaagaac
aattcgtcatcttccatctccaccaattccctcactgactctgacatcgccaagcacctc
cttaccgtctccggattggagaatggtccggcccaataccaggatgggtatagcaagtta
aggtcatggacttatagttcattagatctttacaagcatgagttgcttcgcgtgctttat
cctgtatttatccattgtttcatggatctggtggaaaaggggcatattcaagaagcaaga
acctttttcaatagcttccgtgaagaccatgaaatgatgcacgcgcgagaccttcagaag
ttggaaggagtcctttctccctcacatctggaggagatggaatttgctcattctcttagg
cagagcaaagtcaaaataaagatctgtcagtactcctatgagctgctgctgcagttttta
cataagacaaaattgaccacaatgcttgggattgtgaatgagcatattaactttcaagtt
tctccgggacagcccagctcaatttctgatgatgctgaagtagtgacacttattggaagc
agccaggatgaggctactctgataaatcagaaggaaatacattgggggctgctcgaagat
tctttagaagagcgcttggaaaagggaggggttttactttcagattctgagaaggcagac
ggagaaatcaaagagggggaattggatgaaaataagaaaagatcaattgaaggagcaaag
caagggatgccaatgaaaaagttaaagaaggacaaggctgtaaatgcaacagcaaaaact
gggcgtcctgaggctaacactgtatctatggcaccacgggtcaaaccagagcttactttg
ccagtaatttcaacagaggtagaaaagtctattcttgaagacttgagaaaccgtgtacag
ttgagtagtgtctcattgccatccatcagcttttatacatttatcaacacgcataatggg
ttaaactgttcatcaatatcccatgatggatctttagttgctggtggattttcagattct
tcattgaagatttgggacatggcaaagcttgggcaagatgctgttggttctgttttgcag
ggtgaaaacggtaccacttcaagtgaacagtttttagggtcgaatggtgggaaacggcct
tatacattatttcagggtcattcagggccagtttattctgccactttcagtcctcttggt
gattatttactttcttcttccgcagactcaacaattcggttatggagcacaaaactaaat
gcaaatcttgtctgctacaagggccataattaccctgtatgggatgttcagtttagccct
gttggccattattttgcaagtgcttcacatgatcgaactgcaaggatttggtctatggac
agaatacagcctttaagaataatggcaggacacttatctgatgttgactgtgtgcaatgg
catgccaattgcaactatattgtgactggttctagtgataaaacagtccgactgtgggat
gtacaaagtggggagtgtgtccgcattttcattggtcacagaagtatggttttgtcgttg
gcaatgtcacctgatggccggtatatggcttctggtgatgaagatggcgcaatcatgatg
tgggacctctcgagtggtcgctgtgttactcctttgatgggtcacacctcatgtgtgtgg
accctggccttcagttgtgaaggttcactcctggcatctgggtctgctgattgcactgtg
aaattgtgggacgtgaatacaagtacaaaggtgccaaggactgaagaaaacaaaggtgga
agtaccaacaggctaagatccttgaaaactcttgcgactaagtctacccctgtctactca
ttgcggttttctcgaaggaatctcctattcgcagctggggccctatcaagaagcgtagat
tactctctccactaa
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