Carya illinoinensis (pecan): 122316456
Help
Entry
122316456 CDS
T08745
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03013
Nucleocytoplasmic transport
cill03015
mRNA surveillance pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122316456
09122 Translation
03013 Nucleocytoplasmic transport
122316456
03015 mRNA surveillance pathway
122316456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122316456
03041 Spliceosome [BR:
cill03041
]
122316456
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122316456
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122316456
Spliceosome [BR:
cill03041
]
Complex C
Other components
EJC/TREX
122316456
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122316456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
122316456
NCBI-ProteinID:
XP_042988916
LinkDB
All DBs
Position
7:complement(42739659..42744518)
Genome browser
AA seq
427 aa
AA seq
DB search
MGETRENDGYEEELVDYDDEEANAPASALKVNGEATKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVSAIVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILAL
GRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KRFMQEPMEIYVDDEAKLTLHGLVQHYIKLSESEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLKECNFPSICIHSGMSQEERLTRYKGFKEGQSRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNNVQMRFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaccagggagaacgatgggtacgaggaagagcttgtagactacgacgacgaa
gaagccaatgccccagcctccgcgctcaaagttaatggcgaagccaccaagaagggctat
gttggaattcacagttcaggattcagagacttccttctgaagccagagcttcttcgagct
attgtggactctggatttgagcacccgtcggaagtgcaacatgaatgtatccctcaagcc
atcctgggaatggatgtcatttgccaagctaagtccggaatgggcaaaactgctgttttt
gttctttcaacattgcagcagattgaacctgttgccggacaagtttctgcgattgtgctg
tgtcatactagggagttagcttaccagatttgtcatgagtttgagagattcagtacatac
ctacctgatctcaaggttgctgtcttctatggcggggtaaatatcaaagtgcacaaggat
ttgctgaaaaatgaatgccctcatattgttgttggaacgcctggaagaatattagcactg
ggaagagataaggacctttctctgaagaatgtgaggcattttattctcgatgaatgtgac
aagatgcttgaatcgctagacatgaggagagatgtgcaggagattttcaagatgactcct
catgataaacaagttatgatgttttctgcaacactcagcaaagaaatacggccagtttgt
aagagatttatgcaagaaccaatggaaatttatgttgatgacgaggccaagttgactctt
catggtcttgttcagcactacatcaaattgagcgagtcagagaaaaatcgcaagttgaat
gacctcctcgatgcgttggactttaatcaagttgttatctttgtcaaaagtgtcagtaga
gcagctgagctgaacaagctactgaaggagtgtaatttcccctcgatatgcatccattct
gggatgtcccaagaggaaagattgacacgctacaagggctttaaggaggggcagtcgagg
attctcgtggccacagatttggttggcagggggatcgatattgaacgtgttaacattgtc
attaattatgacatgccagattctgctgacacttacctgcacagggttggtagagctggt
cggttcggtactaaagggcttgcaattacatttgtttcatctgcttctgactcggatgtt
ctcaataatgttcagatgaggtttgaggtggatataaaggaacttcctgagcaaattgat
acctctacatacatgccatcgtaa
DBGET
integrated database retrieval system
