Carya illinoinensis (pecan): 122316485
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Entry
122316485 CDS
T08745
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
122316485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cill04121
]
122316485
Ubiquitin system [BR:
cill04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122316485
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
LRR_NXF1-5
F-box
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
122316485
NCBI-ProteinID:
XP_042988973
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Position
7:28113792..28117561
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AA seq
584 aa
AA seq
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MPRMGYSFPEEVLEHVFSFIQSDEDRNAISEVCRSWHDIERWSRRRVFVGNCYAISPTMV
IRRFPEVRSVKLKGKPHFADFNLVPEGWGGYVAPWISAMASAYPWLEEIRLKRMVITDES
LELISKSFKNFKVLVLSSCEGFSTDGLAAIAANCRNLRELDLGESEVEDLSGHWLSRFPD
NYTSMVSLNIACLGWEVSFSALERLVGRCPNLRTLRLNRAVPLDKLANLLCRAPQLVELG
TGAYSSELRPDVFSNLSGAFSGCKELKSLSGFWDVVPGYLPAVYPICSKLKSLNLSYATI
QSPELIKLVSQCQNLQRLWVLDYIEDAGLDALAASCKDLRELRVFPSDPFGQEPNVPLTE
QGLVSVSEGCPKLQSVLYFCRQMSNAALMTIARNRPNMTRFRLCIIEPHTPDYLTLQPLD
VGFGAIVEHCKDLRRLSLSGLLTDRVFEYIGTHAKKLEMLSVAFAGESDLGLHHILSGCD
NLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSFGACKLLGQKMPGLNVEVIDER
GPPDLRPESCPIDKLYVYRTVSGPRFDMPGFVWTMAENPALRLS
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgccgagaatggggtactcgttcccggaggaggtgctggagcatgtgttctcgttcata
cagagcgacgaggaccggaacgcgatctcggaggtgtgcaggtcgtggcacgatattgag
cggtggagcaggaggcgggttttcgttggcaactgctacgctatcagccccacgatggtg
atccgacggttccccgaggttcggtccgttaagctcaaggggaagccgcactttgctgac
ttcaacctcgtccccgaaggctggggaggctacgtggccccctggatctctgccatggcc
tcggcctacccttggctcgaagagattcggctgaaacgtatggttatcacggacgagagc
ttggagctcatttccaagtccttcaagaactttaaggtcctcgtgctgtcgtcatgcgag
ggcttcagcaccgacggcctcgccgccattgctgccaattgcaggaatttgagagaactg
gacttgggggaaagtgaagtggaagacctgagtgggcactggctgagtcgtttccctgat
aactacacctcaatggtgtcccttaacattgcctgcttagggtgggaggtgagtttctct
gccttggagcgcctggtgggtaggtgccccaacctgaggactctgcggcttaaccgtgcg
gtgccccttgacaagcttgcaaacctactttgtcgggcacctcagcttgttgagttgggc
acgggggcatactcatctgagttgcgacctgacgtattctcaaacctatcaggagctttc
tctggatgcaaggaacttaagagcctgtctggtttttgggatgtagttccaggctatctt
ccagctgtttatcctatctgctccaagttaaaatcattgaacttgagctatgctaccatc
cagagccctgagcttatcaagctagttagccaatgtcagaacttgcagcgcttatgggtt
ctggattacattgaagatgctggccttgatgcccttgcagcatcttgcaaggatctacgc
gaattgagggtatttccatctgatccgtttggacaagaaccaaatgtgccattgacggaa
cagggccttgtttctgtttctgaaggctgtcctaagctccaatcggttctctacttctgc
cggcaaatgtctaatgcagccttaatgactattgccaggaatcgaccaaacatgaccagg
tttcgtctttgtatcattgagccccatactcctgattaccttacccttcaaccacttgat
gtgggatttggagccattgtggagcactgcaaggatctacgacgtctatccctttctggt
cttctcactgatcgtgtgtttgagtacattgggacacatgccaaaaaactagagatgctc
tccgtggcttttgctggagaaagtgatttgggactccatcacatactgtcaggttgtgat
aatcttaggaagctggagattagggactgtccttttggtgacaaggctcttttggccaat
gctgcgaagctggagacaatgcgatccctttggatgtcttcttgctctgtaagttttgga
gcatgtaagctgcttggtcagaagatgccagggcttaatgttgaggttattgatgagagg
ggacccccagatttaagaccggaaagctgccccattgacaagctttacgtatataggaca
gtttctgggccaaggtttgacatgcctggatttgtttggacaatggctgaaaatcctgca
ttgaggctttcttga
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