KEGG   Carya illinoinensis (pecan): 122316613
Entry
122316613         CDS       T08745                                 
Name
(RefSeq) chromatin structure-remodeling complex protein BSH
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill03082  ATP-dependent chromatin remodeling
cill03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:cill00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    122316613
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    122316613
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:cill01009]
    122316613
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cill03021]
    122316613
   03036 Chromosome and associated proteins [BR:cill03036]
    122316613
Protein phosphatases and associated proteins [BR:cill01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     122316613
Transcription machinery [BR:cill03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     122316613
    SWI/SNF complex
     122316613
Chromosome and associated proteins [BR:cill03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    122316613
   PBAF complex
    122316613
   SWI/SNF complex
    122316613
SSDB
Motif
Pfam: SNF5
Other DBs
NCBI-GeneID: 122316613
NCBI-ProteinID: XP_042989222
LinkDB
Position
1:36790026..36793870
AA seq 240 aa
MKPPASTFSKAPVKFRMPTADNLVPIRLDIEIDGQRFKDAFTWNPSDPDSEVAVFAKRTV
KDLKLPPAFITQIASSIQSQLAEFRSFEGQDMYTGEKIVPIKLDLRVNHTLIKDQFLWDL
NNFESDPEEFARTFCRDLGIEDPEVGPAVAFAIREQLFEVATQSVASARESRLSKKGRRG
FEYVPASKAGGAVLDLVKLFGHKSSVVRKRKEWEVYEPIVDHLSNEEVDALEAREERNFR
NT seq 723 nt   +upstreamnt  +downstreamnt
atgaaaccaccggcgtcaactttctctaaagcccccgtcaagttcaggatgccgactgcg
gacaacttggtaccaattcgtttggacatcgaaattgacgggcagagattcaaagatgct
tttacttggaacccttctgatccggattcggaagtcgctgtatttgcaaaaaggacagtg
aaagatttgaagctgcctccagcattcataacacagattgcttcatccattcaatcgcag
cttgcagaatttcgatcatttgaaggacaagatatgtacactggcgagaagattgttcct
attaagcttgatcttcgagttaatcatacacttataaaggaccaatttttgtgggatttg
aacaactttgagagtgatccggaagagtttgctagaaccttctgcagagatctgggcatt
gaagaccctgaagttggaccggcagttgcctttgctattagagagcagctttttgaggtt
gcaactcaaagcgtagcttcagcaagagaaagcagactaagcaagaagggtcgacggggg
tttgaatatgttccagccagtaaagcaggtggtgctgtactggacctggtgaagcttttt
ggtcataaatctagtgttgttcggaaaagaaaggagtgggaagtatacgaacccattgtt
gatcatctatctaatgaggaggtggatgcccttgaagctagagaagagaggaattttcgg
taa

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