Carya illinoinensis (pecan): 122316889
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Entry
122316889 CDS
T08745
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122316889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122316889
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122316889
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122316889
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
DNA_pol_A_exo1
Motif
Other DBs
NCBI-GeneID:
122316889
NCBI-ProteinID:
XP_042989651
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All DBs
Position
7:complement(43298623..43300222)
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AA seq
274 aa
AA seq
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MSILPKGDSIQIRDVWNDNLEEEFALIREIVDNYNYIAMDTEFPGVVLRPVGTFKNINDY
NYQTLKDNVDMLKLIQLGLTFSDEHGNLPTCGTDMFCIWQFNFREFNISEDIFASDSIEL
LHQSGIDFKKNNEKGIDVNRFGELLMSSGIVLNNSVHWVTFHSGYDFGYLLKLLTCRSLP
DTQAGFFDLINMYFPMVYDIKHLMKFCNSLHGGLNKLAELLDVERVGVCHQAGSDSLLTA
CTFRKLRDTFFNGSTEKYAGVLYGLGVENGQSTN
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattttaccgaaaggcgattcgattcaaatccgtgacgtatggaatgataatctg
gaggaagaatttgctttgatccgtgaaattgttgacaattataattatattgctatggat
accgagttcccaggcgtggttcttcggcccgtgggtactttcaagaacatcaatgactat
aactaccaaacactgaaagacaatgttgatatgttgaaattaatccaattgggtctcact
ttctccgacgagcatgggaatcttcccacttgcggcaccgatatgttttgcatctggcaa
ttcaacttccgcgagttcaatataagcgaggatattttcgcaagcgattccattgagttg
ttgcaccagtccgggattgatttcaagaagaataacgagaagggcattgatgtgaatcgg
ttcggtgagcttttgatgtcgtcggggattgttttgaacaatagcgtgcattgggttacc
tttcatagtgggtatgatttcgggtacttgcttaaattgttgacctgccggagtttgcct
gatacacaagcgggattctttgatctgatcaacatgtattttccgatggtgtatgatatc
aagcatctgatgaaattttgcaatagccttcacggtgggttgaacaagcttgcggaattg
ttggacgtggagagagttggtgtgtgtcatcaagcgggttctgatagtttgctgacggct
tgtacctttagaaagttgagggacaccttcttcaatggctcaacagagaaatacgctggt
gttttatatggtcttggtgtcgagaatggacagagtaccaattga
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