Carya illinoinensis (pecan): 122317162
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Entry
122317162 CDS
T08745
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03020
RNA polymerase
cill03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122317162
09124 Replication and repair
03420 Nucleotide excision repair
122317162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122317162
03400 DNA repair and recombination proteins [BR:
cill03400
]
122317162
Enzymes [BR:
cill01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122317162
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122317162
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122317162
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
MIF4G_like_2
Motif
Other DBs
NCBI-GeneID:
122317162
NCBI-ProteinID:
XP_042990044
LinkDB
All DBs
Position
7:10576932..10586888
Genome browser
AA seq
1847 aa
AA seq
DB search
MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETMERGKPKIAGLSDPRLGTI
DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEEDHK
FKQALKIKNPKNRLKKILDACKNKTKCEGGDELEVQGQDSEEPVKKSRGGCGAQQPKLTI
EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLNVLKRISDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS
EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTLISKDVFMNILMWWEDFDGKIPAPAILKPGPYWTGKQVFNLIIPKQIN
LTRTSAWHLESETGFITPGDTQVRIERGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHVQWLVNYWLLQNGFSIGIGDTIADAATMETINETISKAKNEVKELIRKAQAKEL
EPEPGRTMMESFENKVNQTLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQR
LDSLKMKKTEFERVFRYEFDDEQWNPDYMMQEHIEDLKTIREFRNVFDAEVQKLEADRYQ
LGAEIATTGDNSWPLPVNLKRLIWNAQKIFKIDPRRHSDMHPMEIVEAVDKLQERLKVVP
GDDLLSVEAQKNATLFFSILLRSTFASKRVLEEYKLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
PEVCRTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVRSYYEMPDEEV
APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQCKINKFDESDGFKP
EQEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
LRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTPSHSPVSGTP
YHEGLMSPSYLLSPNLRLSPITDAQFSPYVGGMAFSPASSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPTYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYS
PSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDY
SPSSPPYSPSAGYSPSQPGYSPSSTSQYTPQMSNKDDRSDKDDRSTR
NT seq
5544 nt
NT seq
+upstream
nt +downstream
nt
atggatatgcgattcccctactccccggcggaggtcgccaaagtccgcatggttcagttc
ggcatactcagccccgacgagatcagacaaatgtcggtggtgcagattgagcacagcgag
acgatggaacggggcaagccgaagatagccggtttaagcgatcctcggcttggcaccatt
gatagaaagatgaagtgcgatacttgcacagcgaatatggccgagtgtccaggtcacttc
gggcacctcgagcttgccaagcccatgtttcatattgggtttatgaaaactgtgctcagc
atcatgcgctctgtttgcttcaattgctctaaaattctggccgacgaggaagaccacaag
tttaagcaagcattgaaaataaagaatcccaaaaatagactaaaaaaaatattggatgcc
tgcaagaacaaaaccaaatgtgaaggtggtgatgaacttgaggttcaaggtcaagattct
gaagaaccggtcaaaaagagtcgtggtggttgtggtgctcagcagccaaagctcactatt
gaaggtatgaaaatgattgcagagtacaaggcccaaaggaagaaaagtgatgatcaagaa
caacttcctgaacctgtggaaaggaaacagacacttacagcagagagggttcttaatgtc
ctgaagagaataagtgatgaagactgccaactgttgggcttgaatccgaaatatgcccgt
ccagactggatgattctacaagtccttccgattcctccacctcctgttagaccctccgtg
atgatggatacctcctccaggagtgaggatgatttgactcatcagttggcaatgattata
aggcacaatgagaatctgagaaaacaagagagaaatggggcacccgcacatatcatttca
gagtttgcacagttgttgcagttccatgtagccacatatttcgacaatgagttgcctgga
cagccaagggctacccagagatcagggagacctattaaatctatatgtagtaggcttaag
gcaaaggaaggtcggattaggggtaacttgatgggaaaacgtgtggatttttctgcacga
actgttattactccagatccaaacatcaatatagatgaattaggagtaccgtggagtatt
gccttaaatctcacgtatccagagactgttactccatataatattgaaagattgaaggag
cttgttgaatatgggccccatcctccacctggtaaaactggtgcaaagtatatcattagg
gatgatgggcaaaggctagatctccgttacttgaagaaaagtagtgatcaccatctggag
cttggatataaggtggagcggcatttgaatgatggagactttgtactctttaatcgtcaa
cctagtctccataaaatgtctatcatggggcatagaatcaagattatgccatactcaact
ttccgtctaaatctgtctgttacttcaccatacaatgctgattttgatggtgatgaaatg
aatatgcatgttcctcagtcatttgaaactagagcagaggtgttggagctaatgatggtg
cctaaatgcattgtttctcctcaatcaaatcgtcctgttatgggaatagtccaggatacg
cttttagggtgccgtaaaatcactaagagggatacgcttatatctaaggatgttttcatg
aacatcttgatgtggtgggaggattttgatgggaaaattcctgctcctgcaattttgaag
ccagggccttattggactggaaaacaggttttcaatcttatcataccaaaacagataaat
ctcacacgaacttctgcctggcacttagagtcagaaactgggttcataacgccaggggac
actcaagtgagaattgagaggggggagctacttgctggaactctttgcaaaaagactctt
gggacatctactgggagtcttatacatgttatttgggaagaggttggtccagatgcagct
cgcaagtttctgggtcacgtgcagtggttggttaattattggcttttgcagaatggtttt
agcattgggattggagatacaattgctgatgcagcaacaatggaaacaattaatgaaact
atttccaaagcaaaaaatgaagtgaaagaacttattaggaaagctcaagcaaaggagcta
gaacctgaacctggacgtactatgatggagtcatttgagaacaaagtgaaccagacgttg
aatagggcccgtgatgatgctggaagtagcgcccaaaagagtctatctgagagcaacaat
ctcaaggctatggttactgcaggatccaaaggtagtttcatcaacatatcacagatgact
gcttgtgtggggcagcagaatgttgagggtaagcgaatcccatatgggttcatagaccgg
acgttgccccatttcacaaaagatgattatgggccagaaagtcgtgggtttgtggagaac
tcgtacctgcgtgggttaaccccacaagagttcttttttcatgccatgggtggtagggaa
ggtcttattgatactgcagtgaagacttctgaaactgggtacatccagaggcgacttgtg
aaggctatggaagatattatggtcaaatatgatgggacagtacggaactctttaggtgat
gttatccaatttctgtatggggaagatggtatggattctgtctggatagaatcacagagg
ctggattctttgaaaatgaaaaaaacagaatttgagcgagttttcagatacgagtttgat
gatgaacagtggaacccggattacatgatgcaagaacacattgaagacttgaaaaccatc
agagagttccgcaatgtgtttgatgctgaagttcaaaaacttgaagctgatagataccaa
cttggagcagagattgccaccactggggataattcttggccgttgcctgtcaaccttaag
aggcttatatggaatgcacagaagatctttaaaattgaccctcgaaggcattctgatatg
catccgatggaaattgtggaagctgttgataagctccaggagaggctaaaggttgtacca
ggtgatgatttgttgagtgttgaagcccagaagaatgctaccctcttctttagtattttg
ctacgtagtacatttgctagtaagagggtattggaggagtacaagcttactcgggaagca
tttgaatgggttattggtgaaatagagtcacgcttcctacagtcgcttgtagcacctggg
gaaatgattggatgtgttgctgcccaatctattggtgagcctgccacacagatgactctt
aacaccttccactatgctggtgtcagtgcaaagaatgtcactcttggtgttcccaggttg
agggaaatcattaatgtagctaagaggatcaaaacaccttctctctctgtgtacctgaag
cctgaagtttgtagaactaaggagagggcaaaaaatgttcaatgtgctttggaatacact
actctccgaagtgtaactcaagccacggaggtatggtatgacccagatcctatgagcaca
ataattgaagaggatgttgattttgtcagatcctattatgaaatgcctgatgaagaggtt
gcccctgaaaaaatctccccttggttgcttcgcatagagttgaatcgtgaaatgatggtg
gataagaagttgagtatggccgacattgctgagaagatcaacctcgaattcgatgatgat
ttgacttgtatattcaatgatgacaatgctgaaaaattgatacttcgcatccgtattatg
aatgatgaagctccgaaaggggagctgcaagacgaatctgctgaagatgatgttttcctg
aagaagattgagagtaatatgctgacagaaatggctcttcgaggtatcccagatatcaat
aaagtgtttatcaaacagtgtaagataaacaagtttgatgagagtgacggatttaagccg
gaacaagagtggatgttggatactgaaggtgtcaatctattggcggttatgtgtcatgaa
gacgttgatgcgaggaggaccacaagcaatcacttgattgaagttattgaagttcttgga
atcgaggcagttcgtcggtccttgctggatgaattgcgggttgttatatcttttgacgga
tcatatgtgaattaccgccatttggctatcctgtgtgatacaatgacctatcgcggccat
ttaatggccatcacccgtcatggcatcaatcgaaatgatacaggaccgatgatgagatgc
tcgtttgaagaaacagtggacattcttcttgatgctgcagtttatgctgaaacagattat
ttgaggggtgttactgaaaacataatgttaggtcagcttgcaccaattggcactggggac
tgtgccttgtatctcaatgatgagatgttgaagaatgctattgaactccagctacctagt
tatatggatggtttggattttggcatgacaccttcccactctccagtctccggaactccc
tatcatgagggcttgatgtctccaagttatttgctgagtccaaatctccgactgtcgccc
attacagatgctcagttttctccttatgttggtggaatggcgttttctccggcctcatct
ccaggctacagcccatcatctcctggctacagtccatcatccccaggatatagtcctacg
tcccctggatatagtcccacctctcctggctatagccccacttcccctacctatagtcct
agttctccgggttatagtccaaccagtcctgcctattcacctacaagtccatcttactca
cccacctctcccagctatagccccacatctcctagctacagccctacctctccgagctac
agccccacttctcccacttacagcccaacatcaccgagctatagccccacttcaccggct
tacagccccacttcacctgcgtacagccccacttcacctgcatacagccccacttctcca
tcctacagccccacttctccatcctacagcccaacttctccttcttacagcccaacctca
ccttcctacagcccgacctcaccctcatacagccccacatctccatcatacagccctacc
tcaccagcctatagccccacatcaccaggttacagtccaacttctccaagctatagccca
acctcacctagctatagccctacatctcccagttataatcctcagtctgctaaatatagc
ccttcactggcatactcaccaagcagtccaagattgtccccatccagtccatatagtcct
acgtctccaaattacagtccaacgtcaccttcatattcaccaacatccccatcttattct
ccatcaagcccaacatacagtcccagcagtccatacaactctggagtaagtccggactac
agcccaagttcgccaccatacagtccaagtgcgggttactcaccaagccaacctgggtac
tctccatcatctaccagccagtatactccacaaatgagcaataaagatgataggagtgac
aaagatgacaggagcactcgttaa
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integrated database retrieval system
