Carya illinoinensis (pecan): 122317166
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Entry
122317166 CDS
T08745
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122317166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122317166
03009 Ribosome biogenesis [BR:
cill03009
]
122317166
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122317166
Spliceosome [BR:
cill03041
]
Complex A
U1 snRNP components
U1 related factors
122317166
Complex B
122317166
Ribosome biogenesis [BR:
cill03009
]
Eukaryotic type
Pre-60S particles
Helicases
122317166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
NUDIX_4
Motif
Other DBs
NCBI-GeneID:
122317166
NCBI-ProteinID:
XP_042990052
LinkDB
All DBs
Position
1:37610274..37617530
Genome browser
AA seq
1173 aa
AA seq
DB search
MATAESAQASLGPRYAPDDPTLPKPWKGLIDGSTGVLYYWNPETNVTQYEKPSSLPPPLP
AGQPPIASTPKLASIPVAQSMPPNGVVAQVGQQITQAPQQQGLQAQVSQLSQQHRQMVAQ
QQSSMAAQVSPQQGSQIAQGGPQQSSQLGQPMHQQGQPALPQPQQLMQHMMIYPGQQIQQ
AQSQHMPQQPAQQLTQVVQQLPQQLGQQPQHQGSYMTQPQTHQFTHQQLQYMAYQQSMLP
QGQHNSQQHAQHSAQGQPFANQQDYQVAFLNREEVDFQNGNQIGFSPSQVQQPGTSSVQK
LPSGSNSVQMPQISVHPGQAQQYGASLGNMQQPPMVQLQQTRIDLAPQQHGPRIQNQMGP
PMMHGQKPNLPAVGSKMHEDNLHGRTANEYYFNANKEGPVGSKDPKLAGIPMARNPQDKW
IGGVPSHNVMPGHTSGPNAITGHAIHNSFAHSTGGPPFSNNALMRPPFLATTDVSSLTPV
EAYRQQHEVTATGDNIPAPFMTFEATGFPPELLREIYSAGFTSPTPIQAQTWPIALQSRD
IVAIAKTGSGKTLGYLVPAFILLRHCRNNPQNGPTVLVMAPTRELATQIQDEVMKFGRSS
GVSCTCLYGGAPKGPQLKELDRGADIVVATPGRLNDILEMKKVDFRQVSLLVLDEADRML
DMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDELAANKAI
TQYVEVVPQMEKQRRLEQILRAQERGSKVIIFCSTKRLCDQLARSIGRSFGAAAIHGDKS
QGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAG
ATGMSYTFFSEQDWKYAADLIKVLEGANQHVPPEVREIALRGAPSFGKDRGGMNHFDSGS
SGAGYGRYDSVGRGGMRDGGFGGRGGMRDGNLGGRGGTRGGGFGGRGGIRDGSFGGRNDF
FSGRGNRGRGFGGPGGTLAGRGRNERGPYDRYNNMDGRGRGRGRGRFDNRRDIADRSRGR
SYSRSPERVRTWGHNRSRSNSRSRSRSRSRSRSRSWSRGRSHSRSWSRGRNRSYSRSPSR
SRSRSLSRSRSRSRSRSYDRYERSHEKTPDKQDLTIPEFEVAPESGMSPMSPGTQGNVSP
GANLIAQPPMVAITDALHPEDGLDSCHQSAAEP
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggctacagcggagtctgctcaagcttcccttggtccacggtatgcacctgatgatccc
acccttccgaaaccttggaagggtttgattgatggaagcacaggtgtgttatattactgg
aatcctgaaactaatgtcacccaatatgaaaagccatcctctttgcctccaccattgcca
gctggccagcctcccattgcttctacacctaagttggcttcaataccggtagcccaatcg
atgccaccaaatggtgtggtggctcaggttgggcagcagataactcaagccccacaacag
caggggctacaagcacaagtgagccaattatctcagcagcacagacaaatggtggcacaa
cagcagagttcaatggcagcacaggtttctccccagcagggatctcaaatcgcacaaggt
ggaccacaacaaagttcacaactgggacaacccatgcatcagcaagggcagccagcactg
ccacagccgcagcaattaatgcaacacatgatgatctaccctggtcaacaaatccaacag
gcacagagtcagcacatgcctcagcagccagcccagcagttaacacaagttgttcaacaa
cttccccagcaactggggcaacaaccacaacatcaaggctcttacatgacccaaccacaa
acacatcaatttacacaccagcaactgcaatatatggcatatcagcaaagcatgcttccc
caaggacagcacaattcacagcagcatgcccagcatagcgcacaagggcagccatttgca
aatcaacaggattatcaggtggcatttctaaatagggaggaagttgatttccagaatgga
aaccaaattggattttctccatcccaggtccagcaacctggtacctcatctgttcagaag
cttccttctggaagcaactcggttcagatgccacagatttctgttcatccaggtcaagcc
caacagtatggtgcttctttggggaacatgcagcagcctcctatggttcaattgcagcaa
actaggattgatttggctccccaacaacatggtcctagaattcagaatcagatgggccca
ccaatgatgcatggtcagaagcctaatttgcctgcggttggatcaaagatgcatgaggat
aatttgcatggtagaactgcaaatgaatattactttaatgctaacaaggaagggcctgtc
ggttccaaggatcccaagcttgcagggatacctatggcaagaaatccgcaggataagtgg
atcggtggtgtcccatctcataatgtgatgcctggtcataccagtgggccgaatgccatc
acagggcatgccattcataactcattcgctcattcaactggtggtccgccattctcaaat
aatgctttgatgaggcctccttttttagcaactacagatgtttctagtctcacgcctgtt
gaagcttaccgccaacagcatgaagtcacagcaacgggggacaatattccagcaccattc
atgacatttgaagccactggtttccctccagagttattgagagagatatattctgctggt
ttcacatctcccacgccaattcaggcacaaacatggccaattgcgctgcaaagtagggac
atagtggcaattgcaaaaacaggttctggaaaaacattggggtatttggtccctgccttc
attctccttagacattgccgtaataatcctcagaatggcccaacagttttagttatggct
ccaacccgtgaacttgctacacaaattcaagatgaagtcatgaaattcggtcgttcatct
ggagtctcttgcacgtgcctgtatggcggtgctccaaaaggcccacagctaaaagaatta
gatcgaggagcagatattgttgtggcaactcctggtcgtctcaatgacatccttgagatg
aagaaggttgactttagacaagtttcccttcttgtccttgatgaggctgatcgaatgctt
gacatgggttttgaacctcaaattcgtaagattgtgaatgagatacccccacgcagacaa
actcttatgtacacagcaacttggcccaaagaagtaagaaagatagctagcgatcttctt
gttaatcctgttcaggttaacattggcagtgttgatgagcttgctgcgaacaaggccatc
actcagtatgttgaagtagtcccacaaatggagaaacagaggcgcttggagcagatcctt
agagcccaagaacggggttccaaggttattattttttgctccacgaagaggttgtgtgat
cagcttgcacgtagtattgggcgtagctttggggctgctgcaattcatggggacaagtct
cagggtgagagagactgggttttaaatcagttccgtagtggaaagtcccctatattggtt
gccactgatgttgctgcccgtgggcttgacatcaaagatataagggtggtgattaactat
gatttccctactggggttgaggactatgtccaccgaattggaaggactgggagggctggt
gccactggaatgtcatacaccttcttctctgagcaggactggaaatacgctgctgatctg
atcaaagttctggagggagctaaccagcatgtgcctccagaggtgagagagatagcttta
cgtggtgcaccgagctttggcaaggatcggggtggcatgaaccattttgattctggtagt
agtggggctggttatggtcgttatgattctgttggccgtggtggcatgagggatggtggc
tttggtggccgtggtggtatgagggatggcaacttgggcggacgtggaggcacgaggggt
ggtggtttcggtggacgtggaggtataagagatggtagttttggtggtagaaatgatttc
ttttctggtcgtggcaacaggggacggggatttggtggtcctggtggtacgcttgctggt
cggggcaggaacgagcgtggcccatatgatcgttataacaatatggatgggcgtggacgt
ggccggggacggggaagatttgacaacagaagagacatagctgataggagtagaggcaga
agttatagccgtagccctgaaagagttagaacatggggtcataatcgcagtcgcagcaac
agccgtagccgtagccgtagccgcagccgaagcaggagtaggagctggagcaggggtcgt
agtcatagccgaagctggtctcgtggccgtaatcgtagctacagccgcagccctagccgc
agccgcagccgcagcctcagccgcagccgcagtcgcagtcgcagtcgcagctatgacaga
tatgagaggtcacatgaaaaaactccagataaacaagatcttacaatacctgaatttgag
gttgctcctgaatcagggatgtcacctatgtccccaggtacacaaggtaatgtgtctcct
ggggccaatctcattgcacagccacctatggttgcaattaccgacgcactacatccagag
gatgggctagactcttgccatcaatcagcagcagaaccttaa
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integrated database retrieval system
