Carya illinoinensis (pecan): 122317393
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Entry
122317393 CDS
T08745
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122317393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122317393
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
122317393
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
PIN_4
OB_Dis3
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
CSD2
Toxin_R_bind_C
OB_RNB
Motif
Other DBs
NCBI-GeneID:
122317393
NCBI-ProteinID:
XP_042990401
LinkDB
All DBs
Position
7:complement(234522..254731)
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AA seq
934 aa
AA seq
DB search
MLHSKTFVKKTRGGKVNKQVREHYLRDDIYCGAPICKVCDSSAARLSPSASTILIVDTNV
VLHQIDLLENSAIDDVVMLSIVLEEVKNKNMSVYNRVRALCSNSMRRFFVFANENHKDTF
VKEMNKESKNDRNDRAIRVAAQWYQNHLGGAARVLLITNDRENKRKAIEEGISAETIESY
VKSLDQPNLLDLLVQPASEDLNMEEVEDLRPSKRKVIYAEHKPMSEITSGLHRGIYHQGK
LRVNRYNPFEAYVGSESIGDEIIIYGRANMNRAFDGDIVAVELLPQDQWYEEKSLSIADE
EDGEEYVHLVPNSADDAPRTTNVVQGSAGDTKVVSSRPSGFVVGIIKRNWHSYCGSLEPM
PMPAGSGGTAHALFVSKDRRIPKIRIQTRQLENLLDKRIIVVVDSWDHLSRYPSGHYVRT
IGEIGDRDTESEVVLIENDINSRPFSSQVLACLPSLPWSVSSEDLANPIRQDLRHLRVFS
VDPPGCKDIDDALHCITLPNGNFEVGVHIADVTNFVLPGTPLDDEATQRGTSVYLVERRI
DMLPKPLTEDICSLRADVERLAFSVIWEMTSEAEIISTRYTKSVIKSSAAMSYIEAQARM
DDSRLMDPLTTELRSMNTLAKIMRLKRIERGALTLASAEVKFQIDTETHDPLDIGMYQIR
EANQMVEEFMLAANVSVAEKILKHFPVFSLLRRHPSPTREMLEPLLRTAAAVGLNLDVSS
SKALADSLDHAVGDDPYFNKLIRILATRCMTQAVYFCSGDLSPQEYHHYGLAAPLYTHFT
SPIRRYADVIVHRLLAASLEIYKLPSIFQDRPQLTSIADNLNYRHRNAQMAGRASVELHT
LIYFRKRPTDTEARIVKIRANGFIVFVPKYGIEGPVYLAPRSEKGGGEWFVDEQQQKIKK
MDGSLSFSVLQTIRIHMEVVEPQPNRPKLQLTLI
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgttgcacagcaagacattcgtcaagaaaactagaggcggcaaagtgaacaagcaagtc
agagagcactatctcagagacgatatctactgtggagctccaatatgcaaagtctgtgat
tcctccgctgctcgcttgagtccttctgcttccaccattctcattgtcgacaccaatgtg
gttctccatcagatcgatttgcttgagaattcagcaattgatgatgtggtcatgctctca
atcgtgctggaggaggttaagaacaagaacatgtcggtgtataatagagtcagagctctc
tgcagcaattccatgagacgattctttgtgtttgccaatgaaaaccataaggatactttt
gtcaaggaaatgaataaagaaagtaaaaatgatcgtaatgacagagctatccgggtggct
gctcagtggtatcagaatcatcttggtggtgcagctcgggttttacttataactaatgat
agagagaataagaggaaggctattgaagagggcatttctgcagagacaattgagtcatat
gtgaaatcattggatcaaccaaacttgcttgacctgctagtccaacctgcatcagaggat
ctcaacatggaggaagttgaagatttgagaccttcaaagaggaaagttatttatgcagag
cataagccaatgtctgagattacttctggtttgcaccgtggaatataccatcaaggaaaa
cttcgtgttaatcgctataatccctttgaagcttatgtggggagtgagagcattggtgat
gaaataattatttatgggcgtgcaaacatgaatagggcctttgatggtgacattgtagcg
gtagaacttctacctcaagatcagtggtatgaagagaagtctctatccatagctgatgaa
gaggatggtgaagaatatgttcatcttgtgccaaacagtgctgatgatgctcccagaact
acaaatgttgtgcaaggttctgcaggagacacaaaggttgtgtcatctcgtccatctggc
tttgttgttggtattataaagcggaactggcactcttattgtggatctttggagccaatg
ccaatgcctgcaggtagtggaggtacagcccatgctttatttgtctccaaagatcgcagg
attcctaagattcgaatccaaactcgacagcttgaaaatcttctcgacaagcgaattatt
gtggtagttgattcttgggaccacctatctcgatatccttctggccactatgtacggacc
attggagaaataggcgatagagatactgaaagtgaggtagtcttgatagagaatgacata
aactcaagaccattttcttctcaagttctggcatgcttgccatcattgccttggtcagtg
tcttctgaagatttggcaaatcctatcaggcaggatttgcgacatttgcgtgtctttagt
gtggatcctccaggatgcaaggatattgatgatgcactgcattgtataactcttccaaat
ggaaattttgaagttggagttcatattgctgatgttacgaattttgtgctccctggcacc
ccacttgatgatgaggctacccaaaggggcacatctgtctaccttgttgagcgacggatt
gacatgcttccaaaacctttgacagaagacatatgttcacttcgtgcagatgtcgaaagg
ctagctttctctgttatttgggaaatgacatctgaagcagagattatttctacaagatac
actaaaagtgtgataaaatcttctgcagcaatgtcttacattgaagctcaggcgaggatg
gatgacagtcgattaatggatcctctaacaacagaattgagaagtatgaatactttagca
aagataatgaggttaaagcgtattgagagaggggctttaactcttgcttccgcagaagta
aaatttcaaattgacactgagactcatgacccccttgatattggtatgtaccagattagg
gaagcaaaccaaatggttgaggagtttatgcttgctgctaatgtttcagtggcagaaaaa
atccttaaacattttcctgttttttcacttttaaggcgacatcctagtccaaccagggag
atgcttgaacctttgctgcgtacggctgctgctgttggtctcaacttggatgtctcttca
tcaaaagcattggctgattcacttgaccatgctgtgggtgatgatccatacttcaacaag
ctgatcaggatattggcaaccagatgcatgacacaggcagtttatttctgtagcggggat
ctcagccctcaagaatatcatcattatgggcttgcagcacctctgtatacacattttact
tcacctataaggagatatgcagatgtcattgtacaccgattgcttgctgcatctttagag
atatacaagcttccatcgatattccaagaccgaccgcaacttactagtattgctgacaat
ttaaattataggcatagaaatgcccagatggcgggtagggcctcagtagagctacatact
ctcatctacttcagaaaacggcccacagacactgaggccagaatagtgaagataagagcc
aatggctttattgtgtttgtgcccaagtatggtatagaaggtcctgtgtacttggcaccg
agaagtgagaagggtggtggagaatggtttgtagatgagcaacaacagaagattaaaaag
atggatggtagcctttcttttagtgttctgcagacaataagaattcacatggaggttgtg
gagccacaacccaatcgtccaaaactccagctcacccttatttag
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