Carya illinoinensis (pecan): 122317407
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Entry
122317407 CDS
T08745
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 28
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122317407
03009 Ribosome biogenesis [BR:
cill03009
]
122317407
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122317407
Spliceosome [BR:
cill03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122317407
Ribosome biogenesis [BR:
cill03009
]
Eukaryotic type
Pre-60S particles
Helicases
122317407
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ARTD15_N
AAA_22
Motif
Other DBs
NCBI-GeneID:
122317407
NCBI-ProteinID:
XP_042990428
LinkDB
All DBs
Position
7:complement(34856899..34865514)
Genome browser
AA seq
750 aa
AA seq
DB search
MAPAFVFEPPSDEELDHFDAEEEEEETEELEQVAKEEEDDEDEEKRQRPSNHKSQSPWDF
GSYSESVAEEHARRSTTSVDFKISRALQSRSVPITNNDSDNAESESEPDKQEDYNPEDED
DGTSNAGESKPFFEPSEGATFHANSFMELNLSRPLLRACEALGYIKPTPIQAAVIPLALT
GRDICGSAITGSGKTAAFTLPTLERLLFRPKRVPAIRVLILTPTRELAVQVHSMIEKLAQ
FTDIRCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSLSVDLDDLAVLILDEAD
RLLQLGFNAEIQELVRLCPARRQTMLFSATMTEEVDELIKLSLTKPLRLSADPSTKRPAT
LTEEVVRIRRMREVNQEAVLLALCSKTFTSKVIIFSGTKQAAHRLKILFGLAGLKAAELH
GNLTQVQRLDALELFRKQGVDFLIATDVAARGLDIIGVQTVINYACPRDVTSYVHRVGRT
ARAGREGYAVTFLTDNDRSLLKDIAKRAGSKLKSRIVAEQSITKWSEIIEQMEDQVAAVL
QEESEERALRKAEMEATKAENMIAYKDEIYSRPKKTWFVTEKEKKLVAKAAKASLEKENN
PGKDLISVQQAEDLKMKEKRKREREKNLPRKKRRKLEAAREMLEDENQNNKLEEGNRKIN
KEKTGKSLVDVGYRRAKAVKAKKRAQDAGKIVKKTSKKSKPLTQKSQSRTEEMRDLFQSD
MSERKQKRNVSAPKKKPKSSFKSKSRFKRR
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggctccggcttttgttttcgaacccccaagcgacgaagaacttgatcacttcgatgcc
gaagaagaagaagaagaaacagaagaattagaacaagtagcaaaagaagaagaagacgac
gaagacgaagaaaaacgacagcgaccttctaatcacaaatctcaatctccatgggacttc
ggttcctactccgaatcagtggctgaagaacacgctcgtcgcagcacaacctccgtcgac
tttaagatctccagagcacttcaaagccgctccgttccaatcaccaacaatgattccgat
aacgccgaatccgagtccgaacccgacaaacaagaagattataaccccgaggatgaagat
gatgggaccagtaatgccggtgagagtaaacctttctttgaaccttccgagggagccact
ttccatgccaattcgttcatggagctaaatctatctcgccctctgcttcgggcttgcgaa
gccttggggtacattaagcccacgccaattcaggcggcggtcataccgttagcattgacc
gggagagatatctgtgggagtgcaatcactggttccgggaagactgctgcctttacacta
ccaactttggagaggttattgttccgtccgaaacgtgtgccagcgataagggttcttatt
cttactccaactcgagagttggcagttcaggttcacagtatgatagagaaacttgctcaa
tttactgacataagatgttgcctggttgtaggtggactttcaacgaaggtgcaagaggca
gccttgagatcaatgcccgatattgttgtggccacaccaggacgcatgatagatcattta
cgcaattctttatctgtggatttggacgatcttgcggttctaattcttgatgaagctgac
cgccttctgcagcttggatttaatgctgaaatccaggagctggtccgtctatgtccagca
agaagacagaccatgctgttttcagctacaatgactgaagaagttgacgagcttatcaag
ctttctctgaccaaacctttgcgcctctcggctgacccttccacgaaacggcctgcaaca
ttgacagaggaggtggttaggatacgtcgtatgcgcgaagtaaatcaggaagcagttctg
cttgcattatgctcaaagacttttacttccaaagtgatcatcttcagcggaacaaaacag
gctgcacatcggttgaagattctatttggattagctggtcttaaagctgctgagcttcat
ggaaatcttacacaagtccagcgccttgatgctttggaactcttcagaaagcagggagtt
gattttctgattgcaactgatgtagctgctcgtgggcttgatatcataggtgttcaaaca
gttataaattatgcatgtcctcgggatgttaccagctatgtccatcgtgttggtcgtaca
gctagagctggtagggaaggatatgctgttacatttctaacagataatgatagatctctt
ttgaaagacattgctaagagagctggttcaaagctgaagagtcgaattgttgctgagcaa
tcaataactaagtggtctgagataattgagcagatggaagatcaagtggctgcagttctt
caagaagagagtgaagagagagccctacgaaaagctgaaatggaagcaacaaaggctgaa
aatatgattgcatacaaggatgaaatttattcacggccaaaaaagacttggtttgttaca
gaaaaagagaagaagcttgtcgcaaaggctgcaaaggcatctttggaaaaagaaaacaat
cctggaaaagacttaatcagtgtccaacaggccgaagacctcaaaatgaaggaaaaaagg
aagcgagagcgtgagaaaaatttgcctcggaagaagcgtcgaaaattggaagcagctaga
gaaatgttggaggatgaaaatcaaaataacaaattagaagaaggcaataggaaaattaat
aaagaaaagactggaaagtcacttgtcgatgtgggttaccgacgggcaaaagcagtgaag
gctaaaaagagggcgcaagatgctggcaagattgtgaagaagaccagtaagaaatcaaaa
cctctaacccaaaaatctcaatcaagaacagaagagatgcgggatctattccagagtgac
atgagcgagagaaagcaaaaaagaaacgtcagtgcacccaagaaaaaacccaaaagttca
tttaagagcaagtcaaggttcaagcgcaggtag
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