Carya illinoinensis (pecan): 122317422
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Entry
122317422 CDS
T08745
Name
(RefSeq) BRCT domain-containing protein At4g02110
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122317422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cill03032
]
122317422
03400 DNA repair and recombination proteins [BR:
cill03400
]
122317422
DNA replication proteins [BR:
cill03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
122317422
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
122317422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
BRCT_2
RTT107_BRCT_5
PHD
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
122317422
NCBI-ProteinID:
XP_042990450
LinkDB
All DBs
Position
7:30957101..30964471
Genome browser
AA seq
1213 aa
AA seq
DB search
METNSSSSVFLGVRFVLFGFNPATENKVRCKLVYGGGVDAGQYSPSCTHVIVDKLVYDDP
VCIAARNDAKTLVTALWVDHSFDVGMPVDATSIMYRPLKDMNGIRGAKSLVICLTGYQRQ
DREDIMAMVGLMGAEFSKPLVANKVTHLICYKFEGEKYELAKRINTIKLVNHRWLEDCLR
DWELLPEENYNKSGYELEMMEAEAKDSEEEAEDTTPMRSVGRNINKSPHNSKIGLPTTSK
FPKTVGEGSPSNGPLNKLLIPGEEKSSVQASGFGNVDVSKALDHHTTGSGELPYPLDQNP
YPTGVGNSLTSTSGNAQRTVHSGAKVSPFSYSLKMYRTSSLPMDSQEISGNFSNRSKTPL
GKVHDDFDTSPFKVEQVKDRFGSGCLQNYREGTELVHREDSSGLLPQKRMANAAYASLKS
PKLSIDAAPCLDPVSGDKTLGVEPITLIDGPGSLPVDETANLNAAQQSDGNKSATKTCSK
NSLTCDVSSSKTVSGKTGQDNNAAEKTPQSSFQRLNKSALSTKPDILGLGMGRSAQEVTE
KGEQENQQQDAESSPSKNKLETEKSGGPGNLNLPEGGNDNLITKPPRKKMLAKKTLVSRP
KSTTVNIQKGPLYLNKTISQNDDVIHSFEVKEAADHEKSSGSMKLEICPPTVNLEAPKEM
QTTNVIAGDNMENKNESMDAETEAPEDKLEDELEKPLDEKKSGVVILTDTTDTIMGENWE
RVQHIANTRMYGNAMASVEDTNETKPEKTLCDENSKLVEASLRGDGVKGKMNKGRRCPTG
EAKKKRDILKSKKGVGREKSGAENNEGTGVEKKKRVLFPSGKPSRCPSATNKSENSTEVE
KENRPVQIKEDDGKISINSKIMPRKINQKAGKVNPNSLTTSAGGFPNSEKTEPAWFIFSA
HRLQRKEFQQVIRRLKGRLCRDSHQWSYQATHFISTDPIRRTEKFFAAAASGRWILKTDY
LSACGQAGRFLAEEPYEWHNNGLSEDGAINLEAPRKWRLLRKRTGHGAFYGMRIIIYGEC
IAPPLDTLKRVVKAGDGTILATSPPYTRFLNSGVDFAIISPGMPRVDLWVQEFLKNEIPC
ILADYLVEYVCKPGYSLEKHVLYNTNVWAERSFAHLQARAEEIVEDLMTPPDDNSNDIAC
QVCGSRDRAEVMLMCGDESGSVGCGTGTHIDCCDPPLEDVPEDDWFCHKCSESRRSTNSG
QKQKKGTSLLESK
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaattcttcatccagtgtttttctcggtgtccgtttcgttctcttcggattc
aatccagccaccgaaaacaaggttagatgcaagcttgtttatggcggtggagtcgatgct
ggtcagtatagcccaagttgtactcatgtaatcgtggataagcttgtttatgacgatcct
gtatgtattgctgctcgaaacgacgccaagactcttgtcacggccttatgggttgatcat
agttttgatgttggaatgcctgttgatgccacttcgattatgtacaggccactcaaagat
atgaatggaatacgaggtgcaaaaagtttagtaatatgcttaaccggttatcagcggcaa
gatcgagaggacattatggcaatggttggcttgatgggtgctgaattctctaagccgttg
gtggcaaacaaggttactcatctgatttgctacaaatttgagggggagaagtatgaactg
gccaaaaggataaatacaataaagcttgtcaatcaccgatggctggaagattgcttaagg
gattgggagcttcttcctgaagaaaactataacaaaagtggatatgagttggagatgatg
gaagcagaagctaaggattctgaagaagaggctgaagacacaaccccgatgcgctctgtg
gggagaaacataaataagagccctcataattcaaagattgggctaccaacaacaagtaaa
tttcccaaaacagtaggtgaaggttcaccttcaaatggtcctttaaacaagttactaatc
cctggagaagaaaagtcatctgttcaggcctcaggttttggtaatgttgatgtttctaaa
gcactcgaccatcacactactggttctggtgagctaccttaccctcttgaccaaaatcca
tatcctacaggagtaggaaatagcttgacatctacctctggaaatgcccagaggactgtt
cattctggtgccaaagttagtcctttcagttactcactgaaaatgtataggacatcctca
cttcctatggactctcaagaaatatcaggcaatttcagcaaccgttctaaaactcctttg
ggtaaagtccatgatgattttgacacctctcccttcaaggttgaacaagtgaaggacaga
tttggctctggttgccttcaaaattatcgggaaggaactgagttagtacacagagaagac
tcgagtggtttgttgcctcagaagagaatggcaaatgctgcttatgctagccttaagtca
ccaaagttgagtattgatgcagcaccctgcctggatcctgtgtcaggtgataaaaccctg
ggggtggaaccaataactttgattgatggccctggtagtcttcctgtggatgagactgct
aatctaaatgctgcacagcaatcagatggtaataaatcagcaactaaaacatgtagcaag
aattcattaacatgtgatgtgtcttcctcgaaaactgtgagtggaaagactgggcaagat
aacaatgctgctgagaagacacctcaatcatcttttcagagattaaataagtctgcctta
tcaactaagcctgacattttaggtttaggtatggggagatctgcacaagaagttacagaa
aaaggggagcaagagaatcagcagcaagatgcggagtcatctcccagtaaaaataagttg
gagactgagaaatctggtgggcctggcaatttgaacttgcctgaaggaggaaatgataac
ttgatcacaaaacctcctaggaagaagatgttggccaagaagactttggtttcaagaccc
aagtcaactactgttaatatccaaaagggtcctttatacttaaataaaactatctcccaa
aatgatgatgtaattcattcatttgaagtgaaagaggcagcggatcatgagaagtcttcc
ggttctatgaaacttgagatatgtcctccaactgttaatcttgaagcaccaaaggagatg
cagacaacaaatgtgatagctggtgacaatatggagaataaaaatgaatcaatggatgct
gaaactgaggctccagaagacaaacttgaagatgaattggagaaaccacttgatgaaaag
aagtctggagtggttatattgacagatacaacagatacaatcatgggagagaattgggaa
agggtgcagcatattgcaaacacaagaatgtatggtaatgcaatggcttcagtggaagac
accaatgaaactaaaccagaaaagactctttgtgacgagaattctaagcttgttgaagcg
agcttacgcggggatggtgtcaaagggaagatgaataaagggcgaagatgcccaacaggt
gaagccaaaaagaagagagatatattgaaatctaagaaaggtgtgggtcgtgaaaaaagt
ggggctgagaacaatgaggggacaggggtggaaaagaagaaaagagtgctgtttccttct
ggtaaacctagtagatgccctagtgcaacaaataagtcagagaacagtactgaagtggag
aaagagaacaggccagttcagatcaaagaggacgatgggaaaatatctattaattctaaa
ataatgccaaggaagatcaatcaaaaggcagggaaagttaatccaaattctctaacgact
tcagcgggagggtttccaaacagtgagaaaacagaacctgcgtggttcatatttagtgca
catcgactacaaagaaaggagtttcaacaagttattaggcgtttgaaaggaaggctttgt
cgagattctcatcaatggtcataccaggccacacactttatatccacagatccaattcga
aggacagagaagttctttgctgctgctgcatctgggaggtggattctcaagactgattat
ctaagtgcctgtggtcaggcaggaagattcttggcagaggagccttatgaatggcacaac
aatggcttgagtgaagatggtgcaataaatttggaggctccaagaaagtggcgactcttg
aggaagagaaccggccatggtgcattttatggaatgcgcatcatcatttatggagaatgc
attgcaccacctttggataccctgaagcgtgttgtgaaagctggtgatgggactatattg
gcaacttctcctccttatacccgctttcttaactccggagttgattttgccattatcagc
cctggcatgccacgtgttgatttgtgggtccaggagttcttaaaaaatgagataccttgt
attctagctgattatttggtcgagtatgtttgcaaacctgggtattctcttgagaagcat
gtgctatacaatactaatgtttgggcggagaggtcatttgctcacctgcaggccagggca
gaagagattgtcgaggacctgatgacaccaccagatgataatagtaatgacatagcctgc
caagtgtgtgggtctcgcgatagagcggaggtgatgctgatgtgcggtgatgaaagtggt
tctgttggttgtgggactggtacccatattgactgctgtgatcctccacttgaagatgtt
cctgaggacgattggttttgtcataagtgtagtgaaagcaggcgtagcacaaactcaggc
cagaaacagaaaaagggaacctcattattggaaagcaaatga
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