KEGG   Carya illinoinensis (pecan): 122317466
Entry
122317466         CDS       T08745                                 
Name
(RefSeq) DNA-directed RNA polymerase D subunit 2b-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
cill  Carya illinoinensis (pecan)
Pathway
cill03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cill00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    122317466
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cill03021]
    122317466
Enzymes [BR:cill01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     122317466
Transcription machinery [BR:cill03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     122317466
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 122317466
NCBI-ProteinID: XP_042990509
LinkDB
Position
7:43455329..43465884
AA seq 1189 aa
MEESSDAKEDIGISKGDNLSNGFDMDVDDEEFIESYSIHDLDQEFLKRFCKKAAMSFFNE
YGLISHQINSYNDFIENGLQKVFDSFGEIIVEPGFDPSKKGESEWRYASVRFGKVSLDQP
SFWGGEKDNDMFPRHARLQNMTYSSKMKVKIHVQVYTQKLVRSDKFKTGKDQYIDRDVIN
EDNRDITIGRIPVMVKSELCRMKRAEKRDCEFDNGGYFLIKGAEKTFVAQEQLSMKRLWI
LNNQGWTVAYKSETKKNRLILKLVGISKIEDIKGGEKVLTVYFLSTEIPLWILFFALGVS
SDREVMDLIDYDIEDASISNILFASIREADEKCGGFRRVKKALSYVDKLVKSTKFPPGES
IEECFSKYLFPGLKVPKLKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFDLAGELLER
ELRVHLAHARKRMAKVLQRDLYGERSVRPIEHYLDASIITNGLTRAFSTGAWSHPFKRME
RISGVVATLGRTNPLQTLAEMRRTRQQVQYTGKVGDARYPHPSHWGRVCFLSTPDGENCG
LVKNLAITGLVSTNILEPMTTIFFDCGMEELADDASVCRKYKVFLNGDWVGVCEDSISFV
AELRNKRRQKLLPHQVEIKRDEQHEEVRIFSDAGRILRPLLVVENLNRVKGYKGENYTFQ
YLLDKGIIELIGTEEEEDCRTAWGIKYLFMEKEGKSPTQYTHCELDMSFLLGLSCGIIPF
ANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHSLLYPQRPLFRTIASDCLGKPGS
PLGHHGILPKPELYNGQNAIVAVNVHLGYNQEDSLVMNKASLERGMFRSEHIRSYKAEVD
NKETLEKRRKPDDCVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGRCAESGNDHS
IKLKHTERGMVQKVVLSSNDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQEN
FPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSLRYATPFSTLSVDAITEQ
LHRAGFSRWGNERVYNGRTGERVRSLIFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP
VADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICQKCKNVANVIQRSVP
GGRKIRGPYCRVCESLDDIVKVNVPYGAKLLCQELFSMGINLKFETQLC
NT seq 3570 nt   +upstreamnt  +downstreamnt
atggaggagtcgtctgatgccaaggaagatattggtattagtaagggtgataatctttca
aatgggtttgatatggatgtagatgatgaggaatttattgaatcatatagcatacatgat
ctggaccaagagtttttgaaaagattttgtaagaaggcagccatgtcattctttaatgag
tatggtctcattagtcaccaaattaactcatacaatgacttcatcgagaatggtctccag
aaggtatttgattcttttggtgagattattgttgagcctggatttgacccttcaaagaag
ggagagagtgagtggcgatatgcttcagttagatttgggaaggtcagccttgaccaacca
agcttctggggtggtgagaaggataacgatatgtttcctaggcatgcccggcttcagaac
atgacgtactcatcaaagatgaaagtgaaaattcatgttcaggtatatacccaaaaactt
gtcagaagtgacaagtttaaaactggaaaagatcaatatatcgacagagatgtcataaat
gaagataacagggatatcacaatagggaggatccctgtgatggtgaagtctgagctctgc
cgaatgaaaagagcagagaaaagagactgtgagttcgataatggaggatattttttgatc
aagggtgcagagaagacatttgttgctcaggagcagctaagtatgaagaggctttggatt
ttgaataatcaaggttggacagttgcatacaagtcagaaacaaagaagaataggttaata
ttgaaactggtggggatttctaaaattgaagatatcaaaggaggagagaaagttcttact
gtctatttcttgtcaacagaaatccctttatggatattgttttttgctcttggtgtatca
tcagacagagaagttatggacctgattgattatgacattgaagatgccagcatatcaaat
atactgtttgcctcaattcgcgaagctgatgagaaatgtggtggttttcgtagagtaaag
aaagctctaagttatgtagataaacttgtaaagagtaccaaatttcctcctggggaatcg
attgaagagtgctttagcaagtatctgtttccgggactcaaggtcccaaagctgaaggct
cgttttcttgggtatatggtgaagtgcctcctgcaggcttacacaggccgcagaaaatgt
gataacagggatgattttagaaacaagaggtttgacttggcaggtgagctacttgagcgg
gagctgagagtgcatcttgcacatgcacggaagcgcatggcaaaggttttgcagagagac
ctttatggagagcgtagtgtgcgtccaattgaacactatctggatgcttccataatcacc
aatggtcttacacgagcattctcaactggagcatggtcacaccctttcaagaggatggaa
aggatttcaggtgtagtggcaacactagggcgaacaaatccattacagacattggctgaa
atgaggagaacacgccagcaggttcagtacacagggaaagttggcgacgccagataccca
cacccttctcactgggggagggtatgctttctgtctactccagatggtgaaaattgtggg
cttgtgaaaaatttggccattactggcctagtaagcacaaacatattggagcctatgact
actatattttttgattgtgggatggaggagttggcagatgatgcttcagtgtgtagaaaa
tataaagtgtttttgaatggggactgggttggagtttgtgaagattccatttcatttgtt
gctgagctcaggaataaacgacgccaaaagctgttgccacatcaggttgaaatcaaaaga
gatgagcagcatgaagaagtgcgcatattttctgatgctggtaggattctacggcctctt
ttagttgttgaaaacttgaacagggttaaaggatataaaggtgaaaattacaccttccaa
tatctcttggataagggcataattgagctaattggaactgaggaagaagaagactgtcgt
actgcatggggcatcaagtatctgttcatggaaaaagagggaaagtcacctactcagtac
acccactgtgaactagatatgtcatttttattaggtttgagctgtggaattatcccattt
gcaaatcatgaccatgccagaagggtcctttaccagtctcagaagcactcttcacaggct
atagggttctccacaacaaatcctaacattagagtagatactctgtctcacagtctattg
tatcctcagaggccacttttcaggaccatcgcctctgattgtcttggaaaaccaggatct
cctctgggtcatcatggaatactgccaaagcctgaattatacaatggccagaatgccatt
gtggcagtcaatgttcacctagggtacaaccaagaggactccttggtgatgaacaaggct
tctttggagcgtggtatgtttcggtctgagcacattagaagctataaggctgaggttgac
aataaggaaactttggaaaagaggcggaaacctgatgattgtgtcaactttggcaagatt
caaagtaagattggacgtgttgacagtcttgatgatgatggtttccctttcattggtgca
aacctgcagagtggtgacattgtcatagggaggtgtgcagaatctgggaatgaccacagt
attaaattgaagcacactgaaaggggcatggttcagaaagttgtgctgtcttctaatgat
gatggaaagaatttcgctgtggtgtccctgagacaggttcgatccccatgtctcggagac
aaattctcaagcatgcatgggcaaaaaggtgttctaggctttttggagtctcaagagaac
ttccctttcacaatacaagggatagtaccagatattgtaataaatccacatgcatttcct
tcaagacaaactcctggtcaactcctagaggctgctttagggaagggaatagcttgtggt
ggttccttgagatatgccacccctttctccacactctctgttgatgccatcacggaacag
cttcatagggctggattttcaagatggggaaatgagagagtatacaatggacgaactggc
gaaagggttcgctccctcatatttatgggccctaccttctatcagcgtctgattcacatg
tctgaagacaaggtcaaatttcgcaacactggtccagtccatcctcttacccgacaacca
gtggcagatcggaagcgatttggtgggatcaaatttggtgagatggagcgtgactgcctt
atagcacatggtgcctcggcgaacttgcatgaacggctttttacactcagtgactcctcc
caaatgcacatatgccaaaaatgcaaaaatgttgccaatgtgatccaacggtctgtgcct
ggtggccgtaagattaggggtccgtattgccgggtctgtgaatcattagatgacattgta
aaggttaatgtcccttatggggctaagctattgtgccaggaacttttcagtatgggcata
aatctgaagtttgaaacccagctctgttga

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