Carya illinoinensis (pecan): 122317472
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Entry
122317472 CDS
T08745
Name
(RefSeq) periodic tryptophan protein 1 homolog isoform X1
KO
K14791
periodic tryptophan protein 1
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cill03009
]
122317472
Ribosome biogenesis [BR:
cill03009
]
Eukaryotic type
90S particles
Other 90S particles
122317472
Pre-60S particles
Other pre-60S particles
122317472
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_CDC20-Fz
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_EIPR1
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_RIG_2nd
WDR55
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_Aladin
WD40_RFWD3
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_WDR90_POC16_2nd
WD_LRWD1
Beta-prop_TEP1_C
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_WDR41
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
eIF2A
Beta-prop_DCAF12
Beta-prop_WDR75_2nd
WDR54
Beta-prop_IFT122_1st
Ribosomal_uS5m_N
Motif
Other DBs
NCBI-GeneID:
122317472
NCBI-ProteinID:
XP_042990516
LinkDB
All DBs
Position
7:complement(7788160..7801877)
Genome browser
AA seq
495 aa
AA seq
DB search
MISSIAWLPRGAANPVPSVVDPPSKEEIEEMIKSGALEPSGDGDSEEDDEDMNVDAAKEA
DEAAHALEVADALGRTSNNTNSGTGFDDVTNSLRELDMENYDEEDDGIELFSTGLGDLYY
PSNDMDPYLKDKDDEDSEEVEDMTINPMDAVIVCARSNQDDVSHLEVWVYEESDDGDANM
YVHHDIIISADPLCTAWLDCPLKGGEKGNFIAVGSMEPSIEIWDLDIIDEVQPCVVLGGI
AEKKGKGKKTSIKYKKDSHKGPVLGLAWNKEYRNILASASGDKRVKIWDVAAGKCNITME
HHTDKVQAVAWNNHAAQVILTGSFDRSVVMKDGRIPAHSGYKWSVTADVESLAWDPHTEH
SFVVSLEDGTVKGFDIRAAKSDAASESIPSFTLHAHDKAVCTVSYNPSAPNLLATGSEDK
MVKLWDLSNNQPSCVASQNPKAGAVFTIFFSEESPFLLAIGGSKGKLEVWDILSDAGVAR
RFGNYSKQKISQSRS
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgatatcttccattgcttggttacccaggggagccgcgaatcctgtgcccagcgtggtc
gatcctccttccaaagaagaaatcgaagagatgattaagtccggcgctttggaaccaagt
ggagatggtgacagcgaagaagatgatgaagatatgaatgttgatgctgccaaggaagct
gatgaagctgcccatgcattggaggtggcggatgcacttggaagaacttccaataacaca
aattcagggaccggttttgatgatgtaaccaacagtttgagggaacttgacatggaaaat
tatgatgaggaggatgatggcattgagttatttagcacgggtctaggggacctctactac
ccaagtaatgacatggatccatatctaaaagataaggatgatgaggactctgaagaggtc
gaggacatgactattaatccaatggatgctgtcattgtatgtgcacgtagtaaccaggat
gatgtcagtcatctcgaggtttgggtatatgaagaatctgatgatggtgatgcaaacatg
tatgttcaccatgatatcatcatttcagcggatccactttgtactgcatggcttgattgt
ccacttaaaggtggagaaaaagggaattttatagctgttggctccatggaaccttctatt
gagatatgggaccttgacattattgatgaagtacaaccatgtgtagtattaggtggcatt
gctgagaagaaggggaaaggaaagaagacatcaatcaagtacaaaaaagacagtcacaaa
ggtccagtgcttggtcttgcttggaacaaggagtacaggaatatactagctagtgcaagt
ggtgacaaacgagttaagatttgggatgtggctgctggaaaatgtaatattactatggag
catcatactgataaggttcaagcagttgcatggaataatcatgcagcacaagttattctt
actggctcttttgatcgttcagtggtcatgaaggatgggagaataccagcacattctggt
tataaatggtcggtcacagctgatgtagagagcttggcatgggatccacacactgagcac
tcatttgtggtgagtcttgaagatggtactgtcaaaggttttgatatcagggctgccaag
tctgatgctgcttctgagtcaattcctagttttactctccatgcgcacgacaaagctgtt
tgcacagtctcttataatccttcagcacctaatcttcttgcaactggatctgaggataaa
atggtgaagctttgggatctgtcaaacaatcaaccttcttgtgttgcatcccagaatcct
aaagcgggagctgtctttaccattttcttctcagaggaaagcccctttttgctggcaata
ggaggttccaagggaaaactggaagtatgggacatattatctgatgctggggtcgctaga
agatttgggaattacagcaagcagaagatatctcaatccaggtcttga
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