Carya illinoinensis (pecan): 122317526
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Entry
122317526 CDS
T08745
Name
(RefSeq) small nuclear ribonucleoprotein E-like isoform X1
KO
K11097
small nuclear ribonucleoprotein E
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122317526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122317526
03041 Spliceosome [BR:
cill03041
]
122317526
03032 DNA replication proteins [BR:
cill03032
]
122317526
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
122317526
Spliceosome [BR:
cill03041
]
Complex A
U1 snRNP components
Sm proteins
122317526
U2 snRNP components
122317526
Complex B
U1 snRNP components
122317526
U4/U6.U5 tri-snRNP components
122317526
Complex C
U2 snRNP components
122317526
DNA replication proteins [BR:
cill03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
122317526
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
122317526
NCBI-ProteinID:
XP_042990587
LinkDB
All DBs
Position
7:39352918..39356473
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AA seq
92 aa
AA seq
DB search
MASTKVQRIMTQPIVRRQNLIFRFLQSKARIQIWLFEQRDLRIEGRIIGFDEYMNLVLDD
AEEVNVKKKSRKSLGRILLKGDNITLMMNTGK
NT seq
279 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcacaaaagttcagaggatcatgacccagcccattgtgcggcgccagaacctg
attttcaggttccttcagagtaaagcgcgcattcaaatttggctttttgagcagcgagac
ctgaggattgagggccggatcattggctttgatgagtacatgaatttggttctggatgat
gctgaagaagtcaacgttaagaagaagagcagaaaatctttagggcggattcttctcaag
ggagacaacataactctgatgatgaatacgggaaaatga
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