Carya illinoinensis (pecan): 122317963
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Entry
122317963 CDS
T08745
Name
(RefSeq) phytochrome B
KO
K12121
phytochrome B
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
122317963
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_4
PAS_9
PAS_8
PAS_3
Motif
Other DBs
NCBI-GeneID:
122317963
NCBI-ProteinID:
XP_042990991
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Position
1:complement(38673143..38680188)
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AA seq
1134 aa
AA seq
DB search
MASGSRNVRSQHDNQAQSSNTASNMRPHHAESSIPKAIEQFTVDARLHAVFEQSGESGKS
FDYSQSVRATTQSVPEQQITAYLSRIQRGGHIQPFGCMIAVDETTYRVIAYSENARELLG
LLPQSVPSLDKQEILAVGTDVRTLFMPSSSVLLEKAFGAREITLLNPVWIHSKNSGKPFY
AILHRVDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVK
SVKELTGYDRVMVYKFHEDEHGEVVAESKRADLDPYFGLHYPATDIPQASRFLFKQNRVR
MIVDCHATPVQVVQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDE
EAVGGRTAMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLEKHVL
RTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAQIKDIVEW
LLAFHGDSTGLSTDSLADAGYPGAALLGDAVCGMAVAFITKRDFLFWFRSHTAKEIKWGG
AKHHPQDKDDGQRMHPRSSFKAFLEVVKSRSLPWDNAEMDAIHSLQLILRDSFKDDEANN
SKAVIHAQLGDLELQGIDELSSVAREMVRLIETATAPIFAVDVDGCINGWNAKVAELTGL
SVEEAMGKSLAHDLVYKESKEAVEKLLSFALRGEEEKNVEIKMRTFGPEHQKKAVFVVVN
ACSSKDYTNNIVGVCFVGQDVTGQKMVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTC
CSEWNTAMEKLTGWARGDIIGKMLVGEIFGSCCRLKGSDALTKFMIVLHNAIGGQDTDKF
PFSFFDRKGKYVQALLTANKRANMDGQIIGAFCFLQIASPELQQALKVQRQQEKKCFARM
KELAYICQEIKNPLSGIRFTNSLLEATELTEDQKQFLETSAACEKQMLKIIKDVDVERIE
DGISSLELEKEEFLLGSVINVVVSQVMILLRERNLQLIRDIPEEIKSLAVYGDQVRIQQV
LADFLLNMVRYAPSPEGWVEIHVHPSLKKTSDGLTLVHTEFRMVCPGEGLPPELVQDMFH
GSRWMTQEGLGLSMCRKILKHMNGEVQYIRESERCYFLVILELPMPQRGSKSVE
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaggtagtagaaacgtacgctcacaacacgacaatcaagctcagtcctcgaac
acagcgagcaacatgagaccccaccatgcggagtcttccatccccaaagccattgaacag
tttaccgtcgatgctcgcctccacgcagtctttgaacagtccggcgagtcaggtaagtcc
ttcgactactcccagtccgttagagcaaccacacagtccgttcctgagcaacaaatcaca
gcgtacttgtccagaatccaaaggggtggccatatccaaccctttggctgcatgattgcc
gtggacgaaaccacttaccgcgtaatcgcgtacagcgagaacgcccgcgagttgctgggt
cttttgcctcagtcggtcccaagtctggataagcaagagattttggcagttgggactgac
gtgaggacgctcttcatgccctcgagctcggttttgctcgagaaggcgtttggagctagg
gaaattaccctgttgaacccggtttggattcattccaagaattcagggaagcccttttat
gcgattttgcatagggtagatgtaggtattgtgattgatttggagcctgcgaggacggag
gatccagctttgtctattgctggggcggtgcagtcacagaagctggcagtgcgggcaatt
tcacagctgcagtcgctgcccggtggggatatcaagctcttgtgtgatactgtggtgaag
agcgtgaaggagcttactgggtatgatagggtaatggtgtataagtttcatgaggatgag
catggtgaggttgtagccgagagcaagagggctgatttggatccgtattttgggttgcat
tatcctgccacggatattcctcaggcttcaaggtttttatttaagcagaacagggttagg
atgattgtggattgtcatgccacgcctgttcaggtggttcaggatgaagggcttatgcag
cctttgtgcttggttggttccacacttcgtgctcctcatggttgtcatgctcagtatatg
gccaatatgggatcaattgcctcgttagcgatggcagttatcatcaatgggaatgatgag
gaagctgttggtgggaggactgcaatgaggttgtggggcttggttgtttgccatcatact
tctgctcgctgcattccattcccgctccgctatgcttgtgagttcctaatgcaggctttt
ggacttcaattgaatatggagttgcaattggcatcacaattgttggagaagcatgtttta
aggactcaaaccctcttgtgtgatatgcttcttcgtgactcacccactggaattgttact
caaagccctagtattatggaccttgtgaagtgtgatggtgctgccctctactatcaaggg
aagtactacccactaggtgtgactccgactgaggcccagatcaaggacatagtggagtgg
ttgttggctttccatggagattccacaggtttaagcacagacagtttggctgatgctggg
taccctggagcagccttgcttggagatgcagtttgtgggatggctgttgcttttatcact
aaaagggattttctattctggtttcgttcccacactgcaaaagagatcaaatggggtggt
gcaaagcatcaccctcaggataaggatgatgggcagaggatgcatccacgttcatcattc
aaggcatttttggaagtggtaaaaagccgcagcttgccatgggataatgcagaaatggac
gcaatccactctttgcagctaattctgcgagactcattcaaagatgatgaggcaaacaat
tctaaagctgttatacatgcccagcttggggatctagagttgcaagggatagatgagctt
agctcagtggcaagagaaatggtcaggttaatagagactgcaactgcccctatatttgct
gtagatgttgatggctgtataaatgggtggaatgcaaaggttgcagagttgacagggctc
tcagttgaagaagctatggggaagtctttggctcatgatcttgtttataaagaatctaaa
gaagcagtagagaagcttctttctttcgctttaagaggtgaagaagaaaagaatgtagag
ataaaaatgaggacatttggccctgagcatcagaagaaggctgtatttgtggtggtcaat
gcttgctccagcaaggattacacaaataacatagttggagtttgttttgttggtcaggat
gttactggtcaaaaaatggtgatggacaagttcatcaacattcaaggtgattacaaggct
attgttcacagtcccaatcctttgatccctcccatatttgcttcagatgataacacatgt
tgctcagagtggaacactgccatggaaaaactcactgggtgggcccgaggggatataatt
ggaaaaatgttggttggagagatttttggcagttgctgtcgactaaagggttccgatgct
ttgacaaaattcatgattgtcttgcataatgcaattggagggcaggacacagacaagttt
ccattttccttctttgatcgaaaggggaaatatgtacaagctctcttgacagcaaacaag
agggcaaatatggatggccagattattggagccttctgtttcttgcagatagctagtcct
gaattgcagcaagcccttaaagttcagcggcaacaagagaagaaatgctttgcaagaatg
aaagagttagcttacatttgccaggaaataaagaatcctttaagtggtattcgctttaca
aactctcttctcgaggctacagaattgacggaagatcaaaagcagtttcttgagacgagt
gctgcttgtgagaagcagatgttgaagattataaaggacgttgatgtggagagaattgaa
gatggaatcagttcattggaacttgagaaggaggaatttttactcgggagtgtcataaat
gttgttgttagccaagtaatgatattgctgagggaaagaaatttacaattgattagggat
attccggaagaaatcaaatcattggctgtttatggtgatcaagtgaggatacagcaggtc
cttgctgatttcttgctaaatatggtgcgttatgcaccatctccagaaggttgggttgag
attcacgttcatccaagcttgaagaaaacttctgatggattgactcttgtacatacagaa
ttcaggatggtatgccctggcgaaggtcttcctcctgaattggttcaggacatgttccat
ggcagtcgatggatgactcaggaaggccttgggctgagcatgtgcaggaagattttgaag
cacatgaatggtgaggtccaatatatcagagagtctgaaagatgctatttcttggttatt
cttgaacttcccatgcctcagagaggctcaaaaagtgtcgagtag
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