Carya illinoinensis (pecan): 122317965
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Entry
122317965 CDS
T08745
Name
(RefSeq) small nuclear ribonucleoprotein SmD3b-like
KO
K11088
small nuclear ribonucleoprotein D3
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122317965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122317965
03041 Spliceosome [BR:
cill03041
]
122317965
03032 DNA replication proteins [BR:
cill03032
]
122317965
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
122317965
Spliceosome [BR:
cill03041
]
Complex A
U1 snRNP components
Sm proteins
122317965
U2 snRNP components
122317965
Complex B
U1 snRNP components
122317965
U4/U6.U5 tri-snRNP components
122317965
Complex C
U2 snRNP components
122317965
DNA replication proteins [BR:
cill03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
122317965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
122317965
NCBI-ProteinID:
XP_042990996
LinkDB
All DBs
Position
8:8544237..8546498
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AA seq
132 aa
AA seq
DB search
MSRSLGIPVKLLHEASGHVVTVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGAALGVGRGRAVAMRAKAQAAGRGA
PPGRGVVPPVRR
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atgagcaggagcttggggataccggtgaagctactgcacgaggcttcagggcacgtggtg
acggtggagctcaagagcggagaactctacagaggaagcatgatcgagtgcgaggacaac
tggaactgccagctcgagaacattacctacactgctaaggatgggaaggtctcacaactt
gagcacgtctttattcgaggcagcaaagtcagatttatggtcataccggacatgctgaag
aatgctccaatgttcaaacgcctggatgccagaataaagggtaagggtgcagcacttgga
gttggtcggggtagagcagttgcaatgcgagctaaggctcaggctgctggacgtggagca
ccacctggtaggggcgttgtaccacctgttcggaggtaa
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