Carya illinoinensis (pecan): 122318154
Help
Entry
122318154 CDS
T08745
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1
KO
K14485
transport inhibitor response 1
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
122318154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cill04121
]
122318154
Ubiquitin system [BR:
cill04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122318154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
F-box
Motif
Other DBs
NCBI-GeneID:
122318154
NCBI-ProteinID:
XP_042991270
LinkDB
All DBs
Position
8:complement(13446401..13450203)
Genome browser
AA seq
590 aa
AA seq
DB search
MQRMACSFPDEVLEHVFSFVQCDNDRNAISTVCKSWYKIERWSRRRVFVGNCYAISPDMV
IRRFPDVRSIELKGKPHFADFNLVPDGWGGYVAPWISAMAAAYPWLEEIRLKRMVITDEN
LELISKSFKNFKVLVLSSCEGFSTDGLAAIAANCRSYLHCRNLRELDLRESEVEDLSGHW
LKHFPDDYTSLVSLNIACLGCEVSFSALERLVGRCPNLRTLRLNRAVPLDKLANLLRRAP
QLVELGTGAYSSELRPDVFSNLSGAFSGCKELKSLSGFWDVVPGYLPAVYPICCRLTTLN
LSYATIQSPDLIKLVGQCQNLQRLWVLDYIEDAGLDAVAASCKDLRELRVFPSDPYGPEP
NVPLTEQGLVSISEGCSKLQSVLYFCRQMSNAALMTIARNRPNMTRFRLCIIEPGTPDYL
TLQPLDVGFGAIVEHCKDLQRLSLSGLLTDLVFEYIGTYAKKLEMLSVAFAGESDLGLHH
VLSGCEKLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVTFGACKLLGQKMPRLNV
EVIDERGTPDSRPESCPIDKLYIYRTVAGSRFDMPGFVWTIDEDSAMRLS
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgcagagaatggcctgctcttttccggacgaagtgctagagcatgtgttctcgttcgta
cagtgcgacaatgaccggaatgcgatctcgacggtgtgcaagtcctggtacaagatcgaa
aggtggagcaggaggcgggtcttcgttgggaactgctacgcgatcagccccgatatggtg
atccgacggttcccggatgtgcggtccatcgaactcaaggggaagccacactttgccgac
ttcaacctcgtccccgacggatggggtggctacgtggccccatggatctccgccatggcg
gccgcttacccttggctcgaggagattcggcttaagcgtatggtcatcacggacgagaac
ttggagctcatctccaagtccttcaagaactttaaggtcctcgtgctgtcctcctgcgag
ggcttcagcaccgatggcctcgccgccattgctgccaattgcagatcatacttgcactgc
aggaatctgagagagctggacttgcgggagagcgaagtggaagacctgagtgggcactgg
ctcaagcattttcctgatgactacacctcactggtgtcccttaacattgcttgcttaggg
tgtgaagtgagtttctctgccttggagcgcctagtgggtaggtgccccaacctgaggact
cttcggctcaaccgtgctgtgccccttgacaagcttgcaaacctacttcgtcgggcacct
caactggttgagttgggcacaggggcttactcgtctgagttgcgacctgatgtattctcc
aacctatcaggagctttttctggatgcaaggaactgaagagcctatctggtttttgggat
gtagtccctgggtatcttccagctgtttaccctatctgctgtaggttaacaacattgaac
ttgagctatgctactatccagagccctgatctcatcaagctagttggccaatgtcagaat
ttgcagcgcttatgggtgctggattacattgaagatgctggccttgatgccgttgcagca
tcttgtaaggatctacgagaattgagggtgtttccatctgatccatatggaccagaacct
aatgtaccattgacagaacagggccttgtctccatttctgaaggctgctctaagctccag
tcagttctgtacttttgccgtcaaatgtctaatgctgccttgatgaccattgccaggaat
cgacctaacatgaccaggtttcgtctttgtattattgagcccggaactcctgattacctt
acccttcaaccacttgatgtgggatttggagccattgttgagcactgcaaggatctacaa
cggctttccctttctggtcttctcactgatcttgtgtttgagtacattgggacttatgcc
aaaaaattggagatgctgtctgtggcctttgctggagaaagtgatttgggactccatcac
gtgctgtctggttgtgaaaaacttaggaagctggagattagggactgcccctttggtgac
aaggctcttttggccaatgctgcaaagctggagacaatgcgatccctttggatgtcttct
tgctctgtaactttcggagcatgtaagctactaggtcagaagatgccgaggcttaatgta
gaggttattgatgagaggggaaccccagattcaagaccagaaagctgccctatcgataag
ctttacatatataggactgttgctgggtcaaggtttgacatgcctggttttgtttggacg
attgatgaagattcggcaatgaggctttcttga
DBGET
integrated database retrieval system
