Carya illinoinensis (pecan): 122318372
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Entry
122318372 CDS
T08745
Name
(RefSeq) endoribonuclease Dicer homolog 2-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cill03036
]
122318372
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122318372
microRNA pathway
RISC loading complex
122318372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Helicase_C
DEAD
Dicer_dimer
ResIII
PAZ
Cas3-like_C_2
SWI2_SNF2
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
122318372
NCBI-ProteinID:
XP_042991587
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All DBs
Position
8:17875230..17889325
Genome browser
AA seq
1403 aa
AA seq
DB search
MEPVTMERGEPTQPSVDPLPFARSYQLEALEIAIKRNTVVFLETGSGKTLIAIMLLRSYA
YLLRKPSSFIAVFLVPQVVLVSQQAEAVKMHTDLNVGMYCGEMGVDFWDAAMWKQQIEKH
EVLVMTPAILLTCLRHSFFKLGMIKVLIVDECHHARGKHPYACIMTEFYHRQLSSARSKL
PRIFGMTASPIKTKSGVSELSFWEKIEELETMMNSKVYTCASESEVAQFIPFSTPKFKFY
RHKEIPCILYERIAGELQTLKEKHELSLKRYDFKESVADSTSKKLSKVFSALVFCLDELG
VWLGLKAAQFFSCYNTDFCDETDSISWDKLDVFGETIVKDFSLDAFHTFSSYIPSGPDWP
IGDNIKENMDEGLITSKVVCLIESLLDYRDLKDIRCIVFVERIVTAIVLNSLLNEFLPKH
SSWKSKYIAGSNSGLQSQTRKKQNEIVREFREGMVNVIVATSILEEGLDVQSCNLVIRFD
PSSTVCSFIQSRGRARMQNSDYILMVNSEDIATRSRLEKYLASGDIMRKASLHHALLPCS
PLQSDLIGDKFYCVASTGATVTLTSSVSLIFFYCSRLPSDCYYKPAPSWDQKTCTLRLPK
SCPLQNVVVRGNMNAKIMKQTACLEACKQLHEIGALTDNLVPDVLVEEADAQERGNEPYI
DEQPSYFPPELVGHLPKNSNILYHCYLMELEQKFVYDILVHDIVLVLRNKLESDIGSLHF
DLDVDRGSLTVNFKYVGVMHLSTDQVLLCNRFQKTLLRVLIYHDLGSLNDRMDGDILGAE
TDYLLLPATAKHQRPVIIDWPCINSVQFSYKKISEFHSNYSVPGCARSVQTKDGPVCTCL
LQNSLVYTPHNGQVYCITGILGLNANSLLTLRDGRIITYKKYYEERHGIKLCFEHESLVC
GKRIFQVQNYLQRCRNQKEKESSKRSVGLPPELCSIIMSPISINTFYSFSFVPSIMHRVE
SLLIAANLKKMHLDHCIQNDVIPISKVLEAITTKKCQEIFHLESLETLGDSFLKYAASQQ
LFKTYQNQHEGVLSVKKEKIISNAALCKFGCDRKLPGFIRNESFDPKKWIIPGDRSGSAL
SEELLFNTRKIYIRETRKVKSKSVADVVEALIGAFLSVCGETSALLFMDWLGIKVDFHVT
PYERHFQIHAEKLVNVRHLESLLNYSFHDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDS
VLDYLITKHFYCKYPGLSPELLTDMRSASVNNDCYARSAVKWELHKHILHASQELHRHIV
ETINNFEKLSSESTFGWDSETTFPKVLGDIIESLAGAILVDSGYNKERVFDSISPLLEPL
ITPETVTPHPAKELNELCQKYHYIMKEPIKSRNKGLTSITIEVKAGRLSFKHTATAADGK
TAKKVACKEVLKSLKDSGLHGKN
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atggaaccggttactatggaaagaggagaacccactcaaccatctgttgatcctctccca
tttgccagaagttatcagcttgaagcactggagatagcaatcaagcggaacactgtagtg
ttcttggagactggctccggcaagactcttattgccatcatgcttctgcggagttatgcc
tatcttctccggaagccttcatctttcattgctgtcttcttagttccccaagttgtcttg
gtttctcaacaagctgaagctgtgaaaatgcacactgacttgaatgtgggcatgtattgc
ggagaaatgggagttgacttttgggatgctgctatgtggaagcaacaaatagaaaaacat
gaggtgcttgtgatgacacctgcaattttgcttacttgcttgaggcatagctttttcaaa
ctaggcatgataaaggttttaatagttgatgaatgccaccatgccaggggtaaacaccct
tatgcttgcattatgacagagttctatcaccgtcagctaagttctgctcgatccaaactt
cctagaatatttgggatgacggcttcccccataaagacaaagagtggagtctcagaatta
tctttctgggaaaagattgaggagcttgagaccatgatgaattcaaaggtgtatacttgt
gctagtgaatctgaggttgctcagtttataccattttcgactccaaagttcaaattttat
aggcacaaggaaatcccatgtattttatatgagcgtatagctggtgaattgcagacttta
aaagaaaagcatgaactctctctgaaaaggtatgatttcaaagaatctgttgcagattct
acaagcaaaaagctatcaaaagttttttcagctttagtattctgtttggatgaactaggt
gtttggctgggtctaaaggccgcacagttcttttcctgctacaatactgacttctgtgat
gaaactgactcaatttcatgggataaactggatgtgtttggtgagacaattgttaaagat
ttcagtttggatgccttccacacattttcctcatacattccatcaggtccggactggcct
attggtgataacattaaagagaatatggatgaagggcttattacttcaaaagttgtgtgt
ctcattgaatctcttcttgattacagggatttaaaagacattagatgtatagtctttgtg
gaaaggattgtcacagccattgtactaaattctctgttgaacgagtttcttccaaaacac
agcagctggaagtctaaatatattgcagggagtaactctgggctgcagtcccagacaagg
aaaaaacaaaatgaaattgtgcgagaatttcgtgaaggcatggtgaacgtaattgttgcg
acatcaattcttgaagagggactagatgttcaaagctgcaacttggttattagatttgac
ccatcttccactgtttgtagtttcatacagtcccgaggtcgtgctagaatgcaaaattca
gattatatattaatggtcaatagtgaagatattgctactcggtctcgactggagaaatat
cttgctagtggagatattatgaggaaggcatccttacatcatgctttgctgccttgctca
cctcttcaaagtgatttaattggcgataaattttattgtgttgcaagcactggagcgact
gtgactcttacttctagtgtcagtttaatattcttctattgctcacggctcccttcagat
tgctattataaaccggctccaagctgggatcagaagacttgcactttacgtctacccaag
agctgtcccttacaaaatgttgttgtacgaggaaacatgaatgctaaaattatgaagcaa
actgcctgccttgaagcatgcaagcaacttcatgagattggtgccttgacagataatctt
gttccagatgttcttgtggaagaagctgatgctcaagaaagggggaatgaaccttatatt
gatgagcaacccagttacttcccacctgagctggtcggtcatcttccaaagaattcgaat
atattgtatcattgctacttaatggagctggagcagaaatttgtttatgatattctagtt
catgatattgtgcttgtcctgagaaataagctagaatctgatattggaagcttgcatttt
gacttggatgttgacaggggtagtttgacagtgaactttaaatatgtaggagtgatgcat
cttagcacggatcaggtccttttgtgtaataggtttcagaaaactcttttaagagttctt
atttatcatgatttgggaagtttgaatgaccgtatggatggagatattttgggagctgag
actgattatcttttgctcccagccactgcaaagcatcagagacctgtgatcattgattgg
ccttgcattaattctgtgcaattttcatataagaagatttctgaatttcactcgaattat
tctgtacccggttgtgcacgtagtgtacaaaccaaagatggtcctgtctgcacttgcctg
cttcagaattctttggtctacacccctcacaatggtcaggtgtactgcataactgggatt
ttgggattgaatgcaaactctcttctgacgctccgggatggcagaattattacttacaag
aaatactatgaggagcggcatggcatcaagctgtgttttgagcacgaatcattggtttgt
gggaaacgcatttttcaggttcaaaattaccttcaaagatgcagaaatcagaaagagaaa
gaatcgagtaagcggtcagttggattgcctccggaactttgttctataattatgtcgccg
atatcaatcaatacattttattctttctcatttgttccttcaatcatgcaccgggttgag
tctttgcttatagctgccaacttgaaaaagatgcatttggatcattgcatacaaaatgat
gttatcccaatttccaaggttttggaagcaattactacaaagaaatgtcaagagatattc
cacttggaatcgttagaaactcttggagattcttttctcaaatatgctgccagtcaacaa
ctttttaagacctatcaaaatcaacacgagggtgtccttagtgtgaagaaagaaaaaata
atttctaatgcagctctttgcaagtttggatgtgaccggaaacttccgggatttattcga
aatgagtcctttgatccgaaaaagtggatcattcctggtgatagatcgggaagtgcatta
agtgaggagttgctttttaatacaagaaaaatctatattagggaaactaggaaggtgaaa
agtaaaagtgttgctgatgttgttgaggcactaattggtgcatttcttagcgtatgtggt
gaaacatcagccttactatttatggattggttgggtataaaggtagattttcatgttaca
ccatacgagagacacttccaaatacacgctgagaagcttgtaaatgtcagacatttggag
tccctattaaactactcatttcatgacccttctttgttagtggaagcattgacacatggt
tcttacatgcttccagagattccaagatgttatcagcgacttgaatttcttggggactca
gttttggattatctcataaccaagcatttctattgtaaatatcctgggttgtcaccagaa
ctgttaactgacatgagatcggcttctgtgaataatgattgttatgcacgatctgcagtc
aagtgggaactgcacaaacacatcctccatgcttcccaggaactccataggcatatagtt
gaaactattaacaattttgagaagttatcatcagaatcaacttttggatgggactccgag
acaactttccccaaggtacttggtgatattatagagtctctagcaggagccattcttgtt
gattcaggatacaataaggagagagtctttgacagtataagtccccttttggagcctctg
atcacacctgaaacagtaacgcctcatcctgctaaagagctgaatgaactatgccaaaaa
tatcattacattatgaaagaacccatcaagtcccgcaacaagggtcttacttccattaca
atagaggtaaaagctggacgtctctcgttcaagcatacagctacagctgccgatggaaaa
acagcaaaaaaagtagcttgcaaagaagttttgaagtccctgaaggattcaggtttacat
ggtaaaaattga
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