Carya illinoinensis (pecan): 122318377
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Entry
122318377 CDS
T08745
Name
(RefSeq) receptor homology region, transmembrane domain- and RING domain-containing protein 2-like
KO
K15692
E3 ubiquitin-protein ligase RNF13 [EC:
2.3.2.27
]
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cill04121
]
122318377
Enzymes [BR:
cill01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122318377
Ubiquitin system [BR:
cill04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122318377
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PA
zf-RING_2
zf-RING_11
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-rbx1
zf-RING_5
zf-ANAPC11
zf-RING_4
zf-C3H2C3
AF_0924
Motif
Other DBs
NCBI-GeneID:
122318377
NCBI-ProteinID:
XP_042991599
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All DBs
Position
8:complement(6456966..6461075)
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AA seq
443 aa
AA seq
DB search
MNPAVFFWLLSLLAACWMTAATVVLVGDNVTLSFDDMEANFARPVEGSGECGILYEAEPL
DACSPLTNKVEPASNAKSPFVIIIRGGCSFEDKVRRAQNAGFKAAIVYDDEDSGILVTMA
GNSAGIKIHAVFVSKASGEILTKYTGLTDKELWIVPGFENSAWSIMAISFLSLLAMSAVL
ATCFFVRRHRIRLERPQASHAGEFHGMSSRLVKAMPSLIFTTVLEDNCTSITCAICLEDY
SIGDKLRILPCRHKFHAFCVDSWLTAWRTFCPVCKRDARTNTVDPPASESTPLLSSSPAS
VASSVLSSVRSSLASSSAIQIAPASSHSPSVSRVHSVASTPHVQHSLRSYRQSPALSVSR
SSADFRNGSSLRSHASYLVSQHSLGYPSLSPRNSRYLSPFIPSSSYAPPSFVSSSGYQEH
PLHCSESAASFSPFNSAQSLPEC
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgaatccggctgtatttttctggttgctctctctattggcagcctgttggatgacagca
gcgactgtggtgctcgttggggacaacgtcactctctctttcgacgatatggaagctaat
ttcgctcgaccagttgaaggttcaggggaatgtggaatattatacgaggcggagcctctt
gatgcatgctcaccgttgaccaataaagtcgaaccagcttcaaatgctaagtccccgttt
gttataattattaggggaggatgtagttttgaggataaagtcagaagagcacaaaatgct
ggattcaaagctgcaattgtctatgacgatgaagacagtggcatcttggtcacaatggca
ggaaattcggctggcattaaaatacatgctgtatttgtttctaaggcttcaggagaaatt
ctgacaaaatacaccggcttaaccgacaaggagctatggattgtcccaggttttgagaac
tcggcatggtcaatcatggcaatctctttcctttccctacttgccatgtctgcagtgctg
gctacttgtttcttcgttcgcaggcatcgcataagacttgaaagaccacaagcttctcac
gccggggaattccatgggatgagtagtcgattagtgaaagcaatgccaagtttgatattt
acaactgttttggaggataattgtacttcaataacatgcgccatatgccttgaagactat
agtataggagataagctcaggattctaccttgtcgtcacaagtttcatgccttctgtgtg
gattcctggcttactgcctggagaaccttctgtccagtttgcaagcgcgatgcacgaact
aacactgttgatccaccagcttccgaatcaacgccgttgctttcatctagcccagcctcc
gtggcttcttctgtcttgtcgtctgttagatcgtcattagcatcatcatcagcaatacaa
atagcaccagcgtcatctcattccccttcagtttctcgagttcattctgttgctagcact
cctcatgttcagcattctctcagatcctatcgccaatcccctgccctgagcgtaagccga
agctcagctgatttcaggaatggatcatccctaagatcgcatgcttcctatttggtttca
caacactcattgggttacccatctttatcaccacgtaattcaagatacttatctccattt
atcccaagttcaagctatgcgccaccaagctttgtcagttcatctggttatcaggagcac
ccactacattgcagcgagtcggctgcaagtttttctccctttaattctgcccaatctctt
ccagaatgctga
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