Carya illinoinensis (pecan): 122318398
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Entry
122318398 CDS
T08745
Name
(RefSeq) DNA mismatch repair protein PMS1 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03430
Mismatch repair
cill03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122318398
03460 Fanconi anemia pathway
122318398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cill03400
]
122318398
DNA repair and recombination proteins [BR:
cill03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
122318398
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
122318398
NCBI-ProteinID:
XP_042991630
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Position
8:complement(12704606..12717394)
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AA seq
902 aa
AA seq
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MEAAVTPADSPTVIKPINKGAVHRICAGQVILNLSSAVKELVENSLDAGATSIEIALKEY
GEEWFQVIDNGSGISPNNFKVLALKHHTSKLSEFPDLQSLTTFGFRGEALSSLCALGNLT
VETRTKNESVATHLTYDHSGSLAAEKKTARQIGTTVTVKKLFSNLPVRSKEFKRNIRKEY
GKLISLLNAYALIAKGVRLVCSNTTGKNAKSVVLKTQGSDSLKDNIITVFGMSVFNCLEP
VNICISDCCKVDGFLSKAGQSSGRNLGDRQFFFVNDRPVDMPKVGKLVNEFYKGANSRQY
PIAIMNFTIPKGACDVNVTPDKRKIFFSDESSILHALREGLQQIYSPSNASYSVNKVEEH
TKEANSSELCSPHEKSALFLKQSSPDVSDPKVIKEDVTESVSPLKNVEGTQHQLHDLEGS
IQNCNDKFMEKDFTFRAHGTKRADDCRQLTGLLNSSKTNQIASPSTRAVENKIVASTDSS
SRSSYVQSALDKFVTVNKRKHENLSPALSELPVLRNETLSSPLRDCESKRQSAVSRSSAG
NDWVDNSAIMNENEPSKYLQAEKILGKIGNPLSSGGHPNDAEPRKCINQELVDQEIAVPS
SITVSIDSSSKDLNHASMCSTLQFSFEDLKTKRQQRLSSLCFNDYKPGIMKKKRCYAAAT
LELSELDNEDRKEKALAAATTELERLFRKEDFGRMKVIGQFNLGFIIGKLDQDLFIVDQH
AADEKYNFEHLSQSTILNQQPLLRPLRLELSPEEEVVASMHMHIIRKNGFSLDEDPYAPP
GRHFILKAVPFSKNVTFGVEDVKDLISTLADSQGECSIIGSYKMDTYDSVCPTRVRAMLA
SRACRSSVMIGDALGRNEMQKILQHLAELKSPWNCPHGRPTMRHLVDLTTIHKSSEEKDA
NL
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atggaagcagcagtgactccagctgattctccaaccgtgataaagcctataaacaaaggc
gcggttcacagaatctgcgccggccaagtaattctgaacctctcgtccgcagtaaaagaa
ttggtcgagaacagcttggacgccggagccaccagcattgaaatcgctctgaaagagtac
ggcgaagagtggttccaggtcatcgacaatgggtccggcatttcacccaataacttcaag
gttttggcgctcaagcatcatacatcaaaattatctgaatttcctgatcttcaatcattg
accacatttggcttcagaggggaggcattgagttctctttgtgctttagggaatttgact
gttgagactaggacaaagaatgaatcggttgcaacacacttgacttatgaccattccggc
tcattggcagctgaaaagaaaacggcacgtcaaattggtaccacagttactgttaagaag
ttgttctccaatttgccagtgcgaagcaaagaattcaagcgcaatatccgcaaggaatat
gggaagcttatttcattattgaatgcctatgccttaattgcaaaaggcgtgcggttagtc
tgctctaacacaacagggaaaaatgcaaagtctgtggttcttaaaacacaaggaagtgat
tcccttaaagataacatcattacagtgtttggcatgagtgtctttaactgcttagagcct
gtgaatatatgtatatcagactgttgcaaggttgatggattcctttccaaggctggacag
agtagcggacgcaacttgggagatagacaattctttttcgtaaatgaccgaccagtggat
atgcctaaagtcggcaagctggtgaatgagttctataaaggtgcaaactcccggcaatac
cccattgcaatcatgaactttaccattccgaaaggagcatgtgatgtcaatgtaactcct
gataaaaggaaaatatttttttctgatgaaagctccatactgcatgccctgagggagggt
ttacagcagatatattccccaagtaatgcctcttattctgttaataaagttgaggagcat
accaaggaggcaaatagctctgagttgtgttctcctcatgagaaatctgctttgttctta
aaacaatcatctccagatgtcagtgatcccaaagttattaaggaggatgtcacagagagt
gtgagtcccctaaaaaatgttgaaggcacccagcaccaattacatgatttagaaggatca
atccaaaattgtaatgacaaattcatggagaaagattttacctttagagcacatggcacc
aagagggctgacgactgtaggcaattgactggcctcctcaacagttctaaaaccaatcaa
attgcttccccctcgacacgagcagttgagaataaaattgttgccagtacagattctagc
agtcgttcaagttatgttcaatctgcactcgacaaatttgtaactgtcaataaaagaaag
catgaaaatcttagtccagcattatctgaactgcctgtccttagaaatgaaactctttct
tcccctttaagggattgtgagtctaaaaggcagtctgcagtttctagatcctcagctggc
aatgattgggtggataattctgctataatgaatgagaatgagccttccaagtatctccaa
gcagagaagatcctcggtaaaattggaaatccactttcttctggaggccatcctaatgat
gcagaacccagaaagtgtatcaatcaggaactggtggatcaagagatagcggtgccttct
tctattacagtatcaattgattcatctagcaaggatctcaaccatgcatcaatgtgttcc
acactgcaatttagttttgaagatttgaagacaaagaggcagcagaggctatcctcattg
tgctttaatgattacaaacccggaataatgaagaagaaaaggtgctatgccgctgcgact
ctggagctttctgagctggataatgaggaccgaaaggaaaaggctttagcggcagctacc
actgaattggaaagacttttcagaaaggaggactttggtagaatgaaggtaattgggcag
ttcaaccttggttttattattgggaagttagatcaagatttatttattgtggatcagcat
gctgctgatgagaagtacaattttgagcatctttctcaatcaaccatcttgaaccaacag
cctttgctccggccattgaggttggagttatctcctgaagaagaagtggttgcttcaatg
cacatgcacataattaggaaaaatggcttttctttggatgaggatccttatgctccacct
ggacgacattttatattaaaagctgtcccattcagtaaaaacgttacttttggagttgaa
gatgtcaaagacctgatttctacacttgctgacagtcaaggggaatgctcaataattggt
agttacaaaatggacacttacgactctgtttgccctacaagagttcgtgcaatgctggca
tcacgtgcatgcagatcatctgttatgattggagatgcactcggtagaaatgagatgcag
aagatactccagcatttggcggagctgaagtctccttggaattgcccgcatggtaggccc
accatgcgacatttggtcgacttgacaaccattcataaaagttcagaagaaaaggatgcc
aacttgtaa
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