Carya illinoinensis (pecan): 122318426
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Entry
122318426 CDS
T08745
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122318426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122318426
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122318426
Spliceosome [BR:
cill03041
]
Complex C
Other components
Step II factors
122318426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Cas3-like_C_2
nSTAND3
AAA_16
AAA_30
ABC_tran
TsaE
Flavi_DEAD
PhoH
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
122318426
NCBI-ProteinID:
XP_042991690
LinkDB
All DBs
Position
8:7108008..7112470
Genome browser
AA seq
1210 aa
AA seq
DB search
MAPAPKDDGLKKLEYLSLVSKVCSELETHLGFGDKVLAEFITELGRDCETVDEFDAKLKE
NGAEMPDYFVRTLLTIIHAILPPKPKSDKESNKESAPDDKKAKYSALVIADNRDRAKEIE
REIELEAQERRRDREEPLEEDRHRGRDRDRDRDRGRGRDRDRGRDRDRDRDRDRDSGRDG
RDRRRDRYDRDERHRDRDIHGDEDDRRDYRNKERHRDRHEKNGRDDEDVDDSGKEDYRRG
GRDEHNGRYQSNEPELYKVYKGRVSRVMDTGCFVQLNDLKGKEGLVHVSQMATRRISNAK
DVVKRDQEVYVKVISVTGQKLSLSMRDVDQNTGKDLLPLKKSSEDDTNRTNPSGGSREGP
VMRTGLSGIRIVEEDDGVPLRRPLKRMSSPEIWEAKQLVASGVMSVTDYPTYDEEGDGVL
YQEEGAEEELEIELNEDEPEFLQGQSRYSMDMSPVKIFKNPEGSLGRAAALQSALIKERR
EVREQQQRTMLDSIPKDLNRPWEDPMPDMGERHLAQELRGVGLSAYDMPEWKKDAYGKAI
SFGQRSKLSLQEQRQTLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYT
TKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTSPDTVIKYMTDGMLLR
EVLIDENLSEYSVIMLDEAHERTMHTDVLFGLLKELVKRRPDLRLIVTSATLDAEKFSGY
FFNCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLMEPEGDVLLFLTGQEEIDF
ACQALYERMKGLGENVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTI
DGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAY
RNEMSPTSIPEIQRINLGQTTLTMKAMGINDLLSFDFMDPPSPQALLSAMERLYSIGALD
EEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAHA
DQKRAKFFQPEGDHLTLLTVYDAWKNNNFSGPWCFENFVQARSLRRAQDVRKQLLTIMDK
YKLDVMSAGRNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDW
VIYNELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEP
NSWRLSKRRA
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atggcacccgctcccaaagacgacggtctgaagaagcttgaatacttatcgctcgtatcc
aaggtatgctcggaactggaaacgcatctagggtttggagacaaagttcttgctgaattc
atcaccgaattgggccgggactgcgagaccgtggacgaatttgacgcgaaattgaaggaa
aacggcgccgagatgcccgattactttgtacgtacgcttttgacgataatacacgctatt
cttcctccgaaaccgaagtccgataaggaatcgaacaaagagagcgctccggatgataag
aaggccaagtattcggcgctggtgattgcggataatagggatagagctaaggagatcgag
agggaaatcgaattggaggcccaggagcgccgtagagacagggaagaacccttggaagaa
gataggcatagagggagagaccgggaccgggaccgggaccgaggccggggcagagaccgg
gacagaggcagagacagggaccgagatcgagacagagaccgagacagtggcagagatgga
agagataggcgtagggatagatatgatagagacgagaggcatagagatagggatatccat
ggtgatgaggatgatagaagggattacaggaataaggaaaggcacagggatcggcacgag
aagaatggaagagacgatgaagatgtggatgatagtggaaaggaggattatcggagagga
ggtagagacgagcacaatgggcggtatcagtccaatgagcccgaattgtataaggtttac
aagggtagggtttcaagagtgatggacacgggctgcttcgtgcaattgaatgatttgaag
gggaaggagggtttagtacacgtttcacagatggcgactcggcggatttctaatgccaag
gatgtggtgaagcgggatcaggaagtttacgtgaaggtgatttcggtaacgggtcagaag
ctgagtctttcgatgagggatgttgatcagaatactggtaaggatttgcttccgttgaag
aagagctcggaggacgatacaaataggacgaatccgtccggcgggtcaagggaggggcca
gtgatgaggacgggtctgtcggggatcaggattgtggaggaggacgatggtgtgccttta
cgcagaccattaaagaggatgagttcaccggagatatgggaagctaagcagttggttgct
tcgggtgttatgagtgttacagattacccgacgtatgatgaggaaggagatggagtgctt
tatcaagaagagggtgctgaggaggagcttgagattgaactgaacgaggatgagccagaa
ttcttgcaagggcagagccggtattcgatggatatgtcacctgttaagattttcaagaac
ccagaagggtctttgggtcgtgcagctgcgcttcagtctgcactgataaaggagcggaga
gaggtgcgagaacagcaacagcgtacgatgctcgactctattccaaaggatctgaatcgt
ccttgggaagaccctatgccagatatgggtgagaggcatctagcacaggagcttagaggt
gttggtttatccgcatatgacatgcctgaatggaagaaggatgcttatggaaaagccatc
agttttgggcagaggtcaaagctctcccttcaggaacaaaggcaaaccttgccaatctac
aaactaaagaaagaactcatccaggctgtgcatgacaatcaggtcctagttgtcattggt
gagactggttcgggtaagacaactcaggtaactcaatatcttgcggaagctggatatact
acgaaagggaaaattggttgtactcagccccgtagggtggctgccatgtccgtggccaag
agggttgctgaagagtttggctgtcggttgggtgaggaagttggatatgctattcgtttt
gaggattgtactagtccagatactgtcatcaagtacatgacagacggcatgcttcttcgg
gaagttttgatcgacgagaacctttctgagtactctgttattatgcttgatgaagcacat
gagaggacaatgcatacagatgttctttttggattacttaaagaactagtgaaacggaga
cctgacctacgcttgatcgtcacctctgcgacactggatgcagagaagttttcagggtat
ttcttcaactgtaatatatttacaattcctggtaggacttttcctgtggagatactctac
acgaaacagccagaaagcgattacttagatgcatccctaattaccgtgctacagatccac
ttgatggaacctgaaggagacgtccttctcttcttgactggtcaggaggaaattgatttt
gcatgccaagctctttatgagaggatgaaagggctaggtgaaaatgttccggaattgatt
attctaccagtgtatagtgcacttcctagtgaaatgcaatcgaggatatttgaccctgcc
ccgccagggaagagaaaagtggtagtggctacaaatattgctgaggcatctttgaccatt
gatgggattttttacgtaattgatcctgggtttgcgaagcaaaatgtgtataatccgaag
caagggcttgattcactggtcataactcctatttcacaggcatcggccaagcaacgagct
gggcgtgctgggcgtacagggcctgggaaatgttatcgcctctatactgagagtgcatac
cgcaatgagatgtcccctacttcaattcctgaaatccagaggattaacctagggcagact
acgcttactatgaaagctatggggataaatgatcttctgtcttttgatttcatggaccca
ccttccccacaagcgctcctttctgccatggaacggctgtacagtataggagctcttgat
gaggaggggcttctgactaaattgggccggaaaatggcagaatttccgcttgaaccacca
ttatctaagatgctactcgccagtgtggaccttggatgcagtgatgagattttgacaatc
attgcaatgattcaaacgggcaatatcttctacaggccacgggagaaacaagcccatgca
gatcagaagagagccaagtttttccagcctgagggagaccatctgacgttacttacagtt
tatgatgcctggaaaaataataacttttctgggccatggtgttttgagaactttgttcag
gctaggtctttgaggagggctcaggatgtcaggaaacagctgctcaccatcatggacaaa
tataagttggatgtaatgagcgcaggaaggaattttacaaagataaggaaggcaataact
gcaggattctttttccatgctgctagaaaggacccacaggagggttataggaccctggtt
gagaatcagccagtttatatccatcctagcagtgctcttttccagagacaacctgactgg
gtcatctacaatgagctggttatgaccacaaaagagtacatgcgagaggtcacggttata
gatccaaaatggcttgttgaattggcaccaaggttcttcaaagtggcagatcctacaaag
atgagcaagcgcaaacgacaggaaagaattgaaccgctttatgacagatatcatgagcct
aactcttggcgtcttagtaaacgtcgcgcttga
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