Carya illinoinensis (pecan): 122318448
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Entry
122318448 CDS
T08745
Name
(RefSeq) rRNA biogenesis protein RRP5 isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cill03009
]
122318448
Ribosome biogenesis [BR:
cill03009
]
Eukaryotic type
90S particles
Other 90S particles
122318448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
OB_RRP5
Spt6_S1
Suf
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
NRDE-2
Motif
Other DBs
NCBI-GeneID:
122318448
NCBI-ProteinID:
XP_042991742
LinkDB
All DBs
Position
8:28166519..28198964
Genome browser
AA seq
1926 aa
AA seq
DB search
MGAKKNFRDGQKKNKSITDGSKFSKASKQQFKTTKGSNDAVKSGAPALQLEDEVPDFPRG
GGSSLSRQERNEIRAEVDAEFEAEERDQKKNRRKKMQKKNQATEDDFGSLFGDGITGKLP
RYANKITLKNVSPGMKLWGLVAEVNEKDLVIGLPGGLRGLVRMADALDLDVKSEIKDLEN
NILPSRFHVGQLVSCIVLQLDDDKKDVGKRKLWLSLRLSLLHKGFTLEAVQEGMVLTAYV
KSIQDHGYILHFGLPSFTGFLLKNDQAARGEFDVKIGQLLQGIVGKIDKVRQVVYLNCDS
DTVSKCVTKDIKGISMELLVPGMMVNARVQSTLENGVMLSFLTYFTGTVDIFHLQNSFPS
ANWKDEYSQNKKVNARILFIDPLTRAIGLTLNAHLVHNKAIPSNVKVGDIYDDSKVVRVD
KGLGLLLEIPSTPVSTPAYVSISDVAEVEALKLEKKFKEGSHVRVRVLGFKHLEGLATGI
LKATALEDPVFTHTDVKPGMVVRARTLAVDSFGAIVQFPGGVKALCPVQHMSEFEIAKPG
KKFKVGAELVFRVLGCKSKRITVTHKKTLVKSKLGILSSYADAAEGLITHGWITKIEKHG
CFVRFYNGVQGFAPRSELGLEPGCDPNTMYHVGQVVKCRIMSSVPASRRINLSFIIKPAR
VSEEDMVTLGSLVSGVVDGVTTNGIIVYVNAKGYSKGTISPEHLADHHGHATLMKSVLKP
GYEFDQLLILDIVGNNLVLSAKHSLINSSQQLPLDLSQIRPNSVVHGYICNLIETGCFVR
FLGRLTGFSPRNKATDDQRVELSESFYIGQSVRSNILDVSNETGRITVSLKQSSCYSTDA
SFIQEYFVLEDKIARLQSLESKGSELKWVEGFSISSVIEGKIQEVKDIGVVVSFEKYLDV
FGFITHYQLGGTTAKTGSLVQAVVLDVSVAEHLVDLSLKPEFFYESRGGSLKSQSHKKKR
RREPSMDLEVDQTVNAIVEIVKENYLVLSVPEYNYAIGYASVSDYNTQKFPPKQFLNGQS
VIATVMALPSPSTFGRSLLLLNMKSEASETKRSRKKSTCEVGSLVQAEITEINPLGLKLK
FGLGFHGRVHITEVKDVNGLEDPFSNLRVGQTVTARVIAKAKQSDKKSYQWDLSLKPKML
ADSFEMEGKLMANDVDFSTEQCITGYVYKVDSEWVWLTISRDVRGQLFILDSASDPSELE
GFQKRFHVGKGVSGRILSINKEKRLLRLVLRPSFAVANGNVAGVDLKMDDHLKDVTSHVH
EGDIVGGRISKILAGVGGLLVQIGPYLYSRVHFMELRDSWVPNPLSGYYEGQFVRCKVLE
VSRSVKGTIQVDLSLRSSLDGMLTESSAGICNIQQPHSKRVEKIEELHPNIVVQGYVKNV
TSKGCFIWLSRKIDAKILLSNLSDGYVENPEKEFPVGKLLIGRVLSVEPLSKRVEVTLKT
LGRSSSSKSEIDALRTLRIGNIMSGRIKRVESYGLFITIDDTNLVGLCHVSELSDDHVES
IETKYRAGERVTVKILKVDEQRCRISLGMKGSYMGDGIDFQLPSQQEPDEAIRENGFTTL
LTSPGSSLLGAQSMDTEDENGDCPILAQAESRASIPPLEVSLDDIDQSSIDNLVGQDQEN
IDEATTVHEKNKRQAEKKAKKEREQEIRAAEERLVENDIPRTADEFEKLVRSSPNCSFVW
IKYMAFMLSMADVEKARSIAERALNTINIREENEKLNIWVAYFNLENEYGNPPQVAVTNV
FQRALQYNDPKKVYMALLGMYERTEQHKLADELLDKMTKKFKHSCKVWLRRVQRMLKQQQ
DVIQPVVNRALLSLPRHKHIKFISQTAILEFKCGVPDRGRSMFEGILREYPTKTDLWSVY
LDQEIRLGDVDVIRALFERAISLSLAPKKMKFLFKKYLKFEESNGDEERIESVKRKAMEY
VESTMA
NT seq
5781 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgaagaagaattttagggatggccagaagaaaaacaagtctatcacggacggt
tccaagttcagcaaagcttccaagcaacaattcaaaacaaccaagggctcgaacgatgct
gttaagtctggagcaccagccttgcaactcgaagacgaagtccctgatttcccccgaggt
gggggaagttctctgagccgacaagaacgcaacgaaatccgtgctgaagttgatgctgag
tttgaggctgaggagcgggatcagaagaagaataggagaaaaaagatgcagaagaagaat
caggcaacagaggacgattttggttctctttttggtgatggcataactggaaagctacct
agatatgcaaataagatcactttgaagaatgtatcccctggaatgaagctttggggactc
gttgctgaagtaaatgagaaggaccttgtaattggtctgcctggaggcctacgaggatta
gttcgtatggctgatgctttggatcttgatgtgaaaagtgaaattaaggacctggaaaat
aatatcctacctagtcggttccatgttgggcagctggtttcttgcatagtgttgcagctg
gatgatgataaaaaagatgtagggaagcgcaagctctggctttctttgcgtctttctcta
ttacataagggtttcactttggaggctgttcaagaagggatggtacttactgcatacgtc
aagagtatacaagaccatggttacattcttcattttggattgccttcgttcacgggattt
ttgttaaaaaatgaccaagctgcgcggggggagtttgacgtaaaaattgggcagcttcta
caagggattgttgggaaaattgataaagttcgtcaagttgtctatctgaattgtgattct
gacacagtatctaaatgtgtgaccaaggatattaagggaatttcgatggagcttctcgtt
ccgggtatgatggttaatgctcgtgtacagtcaactcttgaaaatggggttatgttatca
ttcctcacttactttacgggaactgttgatatatttcatttgcaaaatagtttcccttct
gcaaattggaaggatgaatatagtcaaaataaaaaggttaatgcacggatattatttatt
gatcccttgactagagctattgggttgaccctgaatgcgcatcttgttcataacaaggct
attccttcaaatgttaaagttggagatatatatgatgactcaaaagtagtcagggttgat
aaaggattgggccttctgcttgaaataccatctactccagtttcaactccagcatacgtt
agtatatctgatgtggctgaagtggaagccctgaagcttgaaaaaaagttcaaggaagga
agtcatgttcgggttcgagttcttggatttaagcacttggaagggcttgctacagggatt
ttgaaggctacagctttggaagaccctgtattcacccatacagatgtcaagcctgggatg
gttgtgagggcaagaactctagctgttgacagctttggcgctattgtacaatttcctggc
ggtgtgaaggctctttgtcctgtccagcatatgtcagaatttgaaattgcaaagcctgga
aaaaaattcaaggttggagctgagctggtattccgtgtgcttggttgcaaatccaagaga
ataactgttacacacaagaaaacacttgtgaaatcgaaacttgggattcttagttcatat
gctgatgctgctgagggattaataacacatggatggataacaaagattgagaaacatgga
tgctttgtccgtttttacaatggagttcaaggatttgctcccagatctgaacttggatta
gagccaggatgtgacccaaatacgatgtatcatgttggacaagttgtcaaatgtagaata
atgagttcagttcctgcttctcggaggatcaaccttagtttcataataaaacctgcaagg
gtttctgaagaggatatggtcacattaggtagccttgtttctggagttgttgatggggta
accaccaatggcattatagtctatgtgaatgcaaaaggttactcaaagggcacaatttct
cctgaacatttggcagaccaccatgggcatgctactttgatgaagtcagttttgaagcca
ggatatgagtttgatcaactgctgatactagatattgttggcaacaatttggtactctct
gcaaaacattctctgatcaattcctctcagcaacttcctttggacctcagtcagattcgt
cccaactcagtagtccacgggtacatctgtaacttaattgaaacgggttgctttgtccgc
tttctggggcgtttgactggtttctcccctagaaacaaggcaacagatgaccaaagagtt
gaactttcagagtccttttacattggacagtctgttcgtagtaatattctcgatgtcagt
aatgaaacaggtagaataactgtttccttgaagcagtcatcttgctattcgacagatgca
tccttcattcaagaatactttgttctggaggataagattgctaggttgcaatcattggaa
tctaaaggttctgagctaaagtgggttgaaggatttagcattagcagtgtcattgaggga
aaaattcaggaggtgaaggatattggagttgttgttagctttgagaagtatctggatgtt
tttggtttcatcacccactatcaattagggggaactactgcaaaaaccggctcgctagtt
caagccgtagttctggatgtttctgtggcagaacacctagtggatttatctctaaagcca
gagtttttttatgaatccagaggaggaagtttaaaaagccaatctcataagaagaaacgc
agaagagaaccatccatggacttggaagtggatcaaacagtcaatgcaattgtggaaatt
gtgaaagagaattacttggtcctttctgtgcccgaatataattatgctattggttatgca
tcggtatccgattataacacccaaaagtttcctccgaaacaatttctgaatggacaaagt
gtcattgccactgttatggctcttccaagcccttcaacattcgggagatcgctattgctt
cttaatatgaagagtgaagccagtgagacaaaaagatccagaaagaagtctacctgtgaa
gtgggatctctggttcaggcagagattacagaaattaaccctcttggactaaaattaaaa
tttggactcggttttcatggacgagttcatataacagaggtgaaagatgttaatggtttg
gaagatccgtttagtaacttaagggttgggcaaacagtgactgcaagggttattgcaaaa
gctaagcaatcagacaaaaaaagctaccaatgggatctgtcgttgaaacctaaaatgctt
gctgattcctttgaaatggagggcaagctgatggccaacgatgttgatttttcaactgaa
caatgcatcactggttatgtatataaggtggacagcgaatgggtttggttaacaatatct
cgagatgttagaggtcagctttttattcttgacagtgcatccgaccctagtgaactagag
ggatttcagaagcgctttcatgtggggaaaggtgtttctggtcgtattttaagtattaac
aaagagaaaaggttattacggttggttctacgtccttcatttgctgtcgcaaatggaaat
gttgctggtgtagatttaaagatggatgatcatttgaaagatgttacatctcatgttcat
gaaggagatattgtgggtggaagaatatcgaaaatacttgcaggtgttggtggattgctc
gtgcaaattggtccttatctgtatagtagagtacattttatggagcttagagactcatgg
gtgcctaacccattatcgggatattacgaagggcaatttgtcagatgcaaagtgctggaa
gtcagccgctctgtcaagggcaccattcaagttgatttatcattacgttcttctttagat
ggcatgcttactgagtcttctgcaggaatctgcaacatacagcagcctcattccaaacgt
gttgagaagattgaggaacttcatcctaatattgttgtacagggttatgttaagaatgtt
acatctaaaggatgcttcatttggctttctcggaagattgatgccaaaatccttctctca
aatttatccgatggatatgtcgagaaccctgagaaagaattccctgttggaaaacttttg
attggcagggtgttgtctgtggagcctttatcaaagcgagttgaagtgacattgaagaca
ttgggcagaagcagctcttcaaaatctgaaattgatgctttgagaactctacgcattgga
aatattatgtctggcagaattaagcgagtggaatcatatggcttgttcatcacaattgac
gacacgaacttggttggattatgccatgtgtcagagctttcagatgatcatgttgaaagc
atagaaactaaatacagagcaggggagagagtgacagtgaagatattaaaggtggatgaa
caaagatgccgcatctctcttggaatgaaaggttcctatatgggcgatggtattgatttt
caactaccctcacaacaagaacctgatgaagccattagagaaaatggttttactacttta
ttaacatctcctggtagtagtttgcttggggctcaaagtatggatactgaagatgaaaat
ggagattgcccaattcttgcacaagcagaatcaagggcttccattccaccacttgaggtc
agtcttgatgacatcgatcaatccagtattgataatttagtcggtcaagaccaagagaat
attgatgaggcaaccactgtacatgaaaagaacaagagacaggcagagaaaaaggcgaag
aaagagagggagcaagaaattagggctgctgaggaaagactagtggagaatgatatacca
agaactgccgatgaatttgaaaaactggttagaagctctcctaattgcagttttgtatgg
ataaagtacatggctttcatgctctctatggctgatgttgagaaagcccgttctattgct
gaaagggctttgaacacaattaatatccgagaagagaacgagaagcttaatatttgggtg
gcttattttaatttggaaaatgagtacggaaatcctccacaggtggctgttacaaacgtc
ttccaaagagctttgcagtataacgatccgaaaaaggtctatatggcactcctgggaatg
tatgagaggacagagcaacataaattggccgatgagcttcttgacaaaatgaccaagaag
ttcaagcattcatgcaaggtttggttaagacgtgtgcaaagaatgttgaagcaacagcag
gacgtgattcagcctgttgtaaatcgtgctttattaagtcttccccgccataagcatatc
aagttcatctcacagactgctatccttgaattcaaatgtggggttcctgatagaggaaga
tccatgtttgaaggaattctgcgggagtacccaacaaaaacagatttgtggagcgtttat
ctggatcaagagattcggcttggagatgtggatgtgatacgcgcactctttgagagggca
atcagtttgagcttagcgcctaaaaagatgaaattcttatttaagaagtatctcaagttc
gaggagtctaatggtgatgaagaaagaatcgagtctgtgaaaaggaaggcaatggaatac
gtcgagagtacaatggcttga
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integrated database retrieval system
