Carya illinoinensis (pecan): 122318631
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Entry
122318631 CDS
T08745
Name
(RefSeq) protein ALTERED SEED GERMINATION 2 isoform X1
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cill04121
]
122318631
Ubiquitin system [BR:
cill04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
122318631
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EML
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_SCAP
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_IFT122_1st
Beta-prop_WDR35_TULP_N
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
TPR_19
Beta-prop_IFT140_1st
ARM_TT21_C
TPR_2
Motif
Other DBs
NCBI-GeneID:
122318631
NCBI-ProteinID:
XP_042992105
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Position
8:complement(5857635..5873624)
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AA seq
758 aa
AA seq
DB search
MESFGFHDGNITEFLETRRFNARQAVNHSLQMHSSFIRRLSLEKVMEGHQGCVNSVAWNA
KGSLLISGSDDTRLNIWSYSSRSLLHSIETGHSANIFCTKFVPETSDELVASGAGDAEVR
LFNLSRLSGRGPDDVSPTATYQCHTRRVKKLAVEAGNPNVVWSASEDGTLRQHDFREGTS
CPPAGSSRQECRNILLDLRCGAKRSLSDPPKQDLALKSCDISSTRPHLLLVGGSDAFARL
YDRRMLPPLTSCLKKMSPPPCVNYFCPKHLSDHGRPSLHLTHVTFSPTGEEVLLSYSGEH
VYLMDVNNAGRSAMQYTSGDVSKLMNFTPILNGVELQPAVSNVFSSCLCRKTTFAALLDK
CRKLIQIAENTLKEATNYFYGIEACNEVLDGYGHDIGPKLKHECLCLRAALLLKRKWKND
ADMAIRDCYNARRIDNSSFQALYHMSEALSQLGKHKDALDFAKAAQLLAPSDSEVAERVE
NVKRDLASVEAEKNKANEGMPRSESRGGRILSLSDILYRSEVNSDVSQDGPGSEREDSDY
DEELELDFETSISGDERDVESNFLHGSVNVRFHRRGDSSRESAGANGICGSPSSSQNDGI
PYQPEAAIDMKQRYVGHCNVGTDIKQASFLGQKGEYIASGSDDGRWFIWEKQTGRLIKML
LGDDAVVNCVQCHPFDSVVATSGIDNTIKIWTPSAPVPSIVAGGAERPETADVLVAMENN
QRKLCRNRETLLPFELLQRFRRHEFTEGTFHPFECTQS
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgttcggttttcacgacggaaacatcaccgaatttctcgagactcgtcgcttt
aacgctcgccaagctgttaatcacagtttacagatgcactcatcatttatacggaggctc
tcccttgaaaaagtaatggaggggcatcaaggttgtgttaattctgtggcttggaatgct
aagggttcacttttgatatcgggatcagatgacacaaggcttaatatttggagctattcc
agtcggagtcttttgcattctatagagactgggcattctgcaaacatattctgtacaaag
tttgtgcctgaaacctctgatgagcttgtggcctctggagctggtgatgcagaagtgcgg
ttgtttaatttgtctcgcttaagtgggagaggacctgatgatgtttctccaactgcaaca
tatcagtgtcacacaagaagagttaaaaaattagctgttgaggctggaaaccccaacgtg
gtatggagtgctagtgaagatgggactttgaggcagcatgactttcgagagggcacatct
tgtcctccagccggatcttctcgtcaagaatgtcgcaatattctacttgacttgcggtgt
ggagcaaagaggtcattgtccgatcctcccaaacaagacttagctctaaaatcttgtgat
atcagttccactaggcctcatttgctccttgttggtgggagtgatgcctttgcacgttta
tatgatagaaggatgctgcctccactgacctcttgtctgaaaaagatgtcacctcctcct
tgtgttaactacttctgcccaaagcatctctctgaccatggacgtccaagcttgcacctc
actcatgttacgtttagtccaactggagaagaggttctccttagttacagtggagagcat
gtgtacctgatggatgtaaataatgctggcaggagtgccatgcaatatacttcaggagat
gtttcgaagttgatgaatttcactccaatcctcaatggggtagaattgcagccagcagta
tccaatgtcttctcaagctgtctgtgcagaaaaaccacttttgctgcattgcttgacaag
tgcaggaaactaattcaaattgcagaaaataccttaaaggaggcgacaaattatttctat
ggaattgaggcatgcaatgaggttttggatggatatggtcatgacattgggcccaagcta
aagcatgaatgtctttgtttacgtgctgctctattgctcaagcggaagtggaaaaatgat
gctgatatggctataagagactgctacaatgctcggaggatcgataattcctcttttcaa
gcactttatcatatgtctgaagctttatcacagttaggcaaacataaagatgctcttgac
ttcgcaaaggcagctcaattgttggccccatcagattctgaagtggcagaaagagtggag
aatgtcaaaagggatcttgcctcagttgaagctgaaaaaaataaggcaaatgagggaatg
ccaaggtctgaatcacgaggtggaagaatactctcgttaagtgatatactctaccgatcg
gaggttaatagtgatgtttctcaagatggtccaggatctgaaagagaagattctgattat
gatgaggaattggagttggacttcgaaacttcaatatcaggtgatgaacgtgatgttgaa
tcaaactttcttcatgggagcgtaaatgtgagatttcatcgaagaggtgattcatcgaga
gaaagtgctggtgcaaatggtatatgtggatcaccttcatcatcacaaaacgacgggata
ccttatcagcctgaggcagcaattgatatgaagcagagatatgttggccactgcaacgtc
ggaactgacataaaacaggccagttttcttggccagaaaggtgagtatattgctagtgga
agtgatgatggtagatggtttatctgggaaaagcaaaccggtagactgataaaaatgctt
cttggagatgatgctgttgtgaactgtgtccagtgccatccatttgattctgttgtggca
actagtgggattgacaacacaataaagatatggactccaagtgctccagtcccttctatt
gtagcaggtggagcagaaagaccagaaactgctgatgtgctggttgccatggaaaacaat
caacgcaaattatgccgcaatcgtgaaactcttctgccttttgaacttcttcagcggttc
cggaggcatgagtttactgaaggaacatttcatccatttgagtgtactcagagctaa
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