Carya illinoinensis (pecan): 122318675
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Entry
122318675 CDS
T08745
Name
(RefSeq) protein CHROMATIN REMODELING 20 isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cill03000
]
122318675
03036 Chromosome and associated proteins [BR:
cill03036
]
122318675
Transcription factors [BR:
cill03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
122318675
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
122318675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
AAA_34
ADD_ATRX
Motif
Other DBs
NCBI-GeneID:
122318675
NCBI-ProteinID:
XP_042992170
LinkDB
All DBs
Position
8:23313455..23396657
Genome browser
AA seq
1546 aa
AA seq
DB search
MEEKLEEVEDAKSISSDSFIDDSEGDEPSTSGKEEGLHFEESLTEEEIEELIAEFVEVES
KAAEAQEALEKESLAKVESEVREELAQTLNGDELETAVANEMTTLIEEWEAVLDELETEG
AHLLEQLDGAGIELPSLYKWIESQAPNGCCTEAWKKRVHWVGSQVTGEFTESIADSEKFL
QIHRPVRRRHGKLLEEGASGFLQKKLANDGSKDGVTENPGVDWSSLNKIFSDGVSDHDTS
FGGKHWASVYLASTPQQAAAMGLDFSGVNEVEEIDDIDGNSNDPFVAAAIANEKELHLSE
EQKKNFRKVKEEEDANIDRKLQIHLKRRRRRKRCKQNINVEDVFPASWVGNSNPISNEKT
CEDGNGVPNNHNDFACQNVLTDVFDHSEASNDVDDNVPICNVASLTSESVLPDYTEPRGS
KRPNENQELKVDFKKSRTVIIESEDETNSLKDNSPCNVANVDPQTESKENICDSGVNSLP
LQSPNEKFYCTACSKVVAEVHQHPLLKVIVCRDCKCLMEEKMQVKDPDCTECYCGWCGGT
SDLVRCKSCKTLFCTSCVKRNIGMDCLSEIQTSGWKCCSCRPSLLHRLSLQLEKAMGSVD
FIVSSSDSGSDDSDGGVNIAFSTRRRQKKKIRRILDDAELGEETRRKIAIEKERQERLKS
LQEQFSAKSKMMSSAGCNGNLSEGVSVEVLGDASTGYIVNVVREKGEEAVRIPPSISAKL
KAHQVSGIRFMWENIIESIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTALRSADLGL
RTALIVTPVNVLHNWRQEFMKWRPSELKPLRVFMLEDVSRERRVELFAKWRAKGGVFLIG
YTAFRNLSLGKNMKDRHMAREICYALQDGPDILVCDEAHIIKNTRADTTQALKQVKCQRR
IALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQR
SHILYEQLKGFLQRMDMNVVKDDLPPKTVFVIAVKLSPIQVKLYKRFLDVHGFTKDKVST
ERIIKRSFFAGYQALAQIWNHPGILQLTKEDRDYVRREVAVENFLVDGSSSDENIDYNMV
LEEKTKSTNDYLHSKNGGGFLKEDWHKFDRLDKLVSSTPMNLCTEHGNCLQFGSNLHLSP
IMKFSRTKKTRLMKKKTPTDWWNGLLHENNFKEPDYSGKMVLLLEILTMSSGMEDKVLVF
SQSIPTLDLIELYLSRLPRGGKSGKLWKKGKDWYRLDGRTESSERQKLVETFNEPTNRRV
KCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQKKPVFAYRLMAHGT
MEEKIYKRQVTKEGLAARVLDRQQVGRTISKEEMLHLFEFGDDENLDTLTDLGQENGHTR
NNNMTGQLGKSLKQAIPLSHGSCSSDNIMESLLGKHYPSWIFNCHEHETLLQENEEEKLS
KEEQDMAWEVYQRTLEWEEVQRVPLDESAREQRPAVSSMPPPAAETATVSQSEKRNHHSV
QRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRDSRLAR
NT seq
4641 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagctagaggaagtagaagatgctaagagtatttctagtgattcttttatt
gacgactcagaaggtgatgaaccatcaacatctggaaaagaagaaggattgcattttgag
gaatctttgaccgaggaagaaatagaagagctaattgctgagttcgtagaagttgagagt
aaggctgcagaggctcaagaagcacttgaaaaggagtctcttgccaaagtggagagtgaa
gttagagaggagttggcacaaactctcaatggggacgagttggaaacggctgttgcaaat
gaaatgacaactctcatagaagagtgggaagccgtgcttgatgagcttgagactgagggt
gctcatttattggaacaacttgatggagctggtattgagctaccaagtttatataagtgg
attgaaagtcaggctcctaatggttgctgtactgaagcttggaaaaagagggtacactgg
gtaggatctcaggtaaccggtgaatttaccgagtcaatagctgatagtgagaagtttctt
caaatccacaggcctgtaagaagacgacatggtaaattattggaggagggtgcaagtgga
tttctacagaaaaaactagctaatgatggaagcaaggatggtgtgacagaaaatccaggg
gttgattggagctctctcaacaaaatattttctgatggtgtatctgatcatgatacttca
tttggcggcaagcattgggcctccgtttacttggccagtactccccagcaagcggcagcg
atgggacttgacttttctggagtcaatgaggtggaggagattgatgatattgatggcaat
tctaatgatccatttgttgcagctgcaattgcaaatgaaaaagaactgcatctttctgaa
gaacaaaagaagaattttagaaaggttaaagaagaagaagatgcaaatattgatcgtaaa
ctgcaaattcatctgaaacggagaagacgtaggaagagatgtaaacagaacatcaatgtg
gaagatgtttttccagcatcctgggttggcaattctaatcccatatcaaatgagaaaact
tgtgaagatgggaatggtgtgcctaataatcataatgactttgcatgccagaatgtgctg
actgatgtgtttgatcattctgaagcttctaatgatgttgatgacaatgtaccaatatgt
aatgtggcttccttaacttctgagtctgttttgcctgattataccgaacccagaggttct
aagcgtccaaatgagaatcaggagctaaaagttgatttcaagaagagtcggaccgttatc
atagagagtgaagatgaaactaattctttgaaggataattcaccttgcaatgtggctaat
gtggaccctcaaaccgagtctaaggagaatatttgtgactctggcgtcaattctcttcct
ttgcagagtccaaatgagaagttttactgtactgcttgcagtaaagtagttgctgaagtg
caccaacatccgcttctgaaagtaattgtttgccgggattgcaaatgcttaatggaagaa
aagatgcaggtgaaggaccctgattgcaccgagtgttactgtggatggtgtggaggtaca
agtgacttggtaagatgcaaatcatgcaagacattgttctgtaccagttgtgtaaagagg
aatattggtatggattgcttgtctgagattcagacatcaggctggaaatgttgttcctgc
cgtccaagtctactccacagattatcattgcagttagagaaagccatgggatctgtagat
tttatagtttctagctctgatagtggttctgatgattctgatggaggtgtgaacattgca
ttcagcactaggagaaggcaaaaaaagaaaattaggaggatccttgatgatgctgagtta
ggagaagagacaagaagaaaaattgcaattgaaaaggaacgccaagaacgattgaaatct
ttgcaagaacagttttctgccaaatctaagatgatgagctctgcaggctgtaatgggaat
ttatctgaaggcgtgagtgttgaagttcttggtgatgcttcaacaggttacatagtgaat
gttgtgagggagaaaggggaagaggctgtgaggattcctccaagcatctcggctaaattg
aaggcccatcaggtttctgggataaggttcatgtgggaaaatatcatagagtccatcaga
aaagtgaagtctggggataaaggtcttggttgcattctagcccacaccatgggccttggt
aaaacttttcaggtcatagctttcttgtacactgctttgagaagtgctgaccttggatta
agaactgcactcattgttactcctgttaatgtgctacataattggcggcaagagttcatg
aagtggaggccttcagagttaaaacctctacgtgtcttcatgcttgaagatgtatcaagg
gaaagaagagtggaattatttgcaaagtggagagcaaagggtggtgtcttcttgattggc
tatacagcctttcggaacttatcccttggaaagaatatgaaggatcggcacatggctaga
gaaatttgttatgccttgcaggatggaccggatattcttgtttgtgatgaagcccatatt
attaagaatactagggctgatacaacccaagccttgaaacaagtgaaatgccagagaaga
attgctttaactggatcacctcttcagaacaatctcatggaatattattgtatggttgat
tttgtaagagagggttttcttggaagcagccatgagtttaggaaccgcttccaaaatcct
atagagaatggtcagcatactaattctactcttgatgatgtgaaaattatgaaccaaagg
tctcatatactctatgaacagttgaaaggatttctccagagaatggacatgaatgtggtg
aaggatgacctaccacctaaaactgtctttgtaattgctgtaaagctttctcctatacaa
gtgaaactatataagagattccttgatgtgcatggattcactaaggacaaggtctctact
gaaaggatcataaagagaagtttttttgccgggtaccaagccttagctcagatatggaac
catcctggtatcttgcaattgacaaaagaagacagagactatgtaaggcgtgaagttgct
gttgagaatttccttgtggatggcagttctagtgatgaaaatatagattataatatggtt
cttgaagagaagacgaagagtacaaatgattatcttcacagcaagaatggcggtggcttt
ttgaaagaggattggcacaagttcgacagattggacaaactggtgtcttcaacacccatg
aatttatgcactgaacatggaaactgtctgcagttcggaagtaatctgcacttatcaccc
atcatgaagttctccaggacgaagaagacgcggctcatgaagaagaagacgcctacggat
tggtggaatggtcttcttcatgaaaataattttaaagagcctgattatagtggcaagatg
gttttgttgcttgaaatcctaaccatgtcttctggaatggaggataaggtattggtcttt
agccagagcattccaaccttagatctgatagaactttatctttcaagattaccccgaggt
ggcaaaagtgggaagctttggaagaaaggaaaagactggtataggctagatggaagaact
gagagctctgagaggcaaaagctggtggagacgttcaatgagccaacgaataggagggtg
aagtgcactttgatttcaacaagagctggatctttggggattaatcttcatgccgctaac
cgcgttgttatagttgatggctcttggaatccaacatatgatcttcaggctatatatcgg
gcttggaggtatggacaaaaaaagccagtgtttgcttaccgactgatggcccatggaact
atggaagaaaaaatttataagcgccaggtgacaaaggagggcctggctgcaagggtgcta
gatagacagcaggtaggaaggactatttctaaagaagagatgttgcatctctttgagttt
ggtgatgatgagaacctggacactctaactgatctgggccaagagaatggtcatacaagg
aacaacaatatgaccggccaacttggaaaatcccttaagcaggcaatacctctttctcat
ggaagctgctcttcagacaatataatggaaagtttgcttggaaaacattatccaagttgg
attttcaattgccatgaacacgagacccttttgcaagagaatgaagaagaaaaactatca
aaagaagagcaagacatggcttgggaagtatatcagagaacattagaatgggaagaagtg
cagcgagttcctctagatgaatctgcacgtgaacaaaggccagctgtgtcaagcatgcct
cctcctgcagcagagactgcaactgtctcacaatccgagaagaggaatcaccattcggta
cagcggaaatgcaccaacctttcgcacctgctgactcttagaagccagggcacaaaagtt
ggttgcagtacagtatgtggggaatgtgcccaggagataagctgggaggacctcaatcgt
gacagcagactggcgaggtga
DBGET
integrated database retrieval system
