Carya illinoinensis (pecan): 122318856
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Entry
122318856 CDS
T08745
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122318856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122318856
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
122318856
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
122318856
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
122318856
NCBI-ProteinID:
XP_042992485
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All DBs
Position
8:complement(14003636..14008216)
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AA seq
327 aa
AA seq
DB search
MREIQLSLNKTQKIRLQRALEKLESLSSKVNSHASVTIADSIPVSYEDGVLKGHGTLDFN
GEVISTVCGVVERVNKLVYVRTLRAKYKPEVGDIIVGRVSEVAQKRWRLDINYSQDAVLM
LSSMNLPDGIQRRRTALDELNMRSIFEEDDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
LLTVPPYLVKRRKQHFHHLEQYGVDLILGCNGFIWVGEHVEARDDMVGDQEKKPEWQNTK
SQKNSMSLEDQERTYTPIETRQNICRIANAIRVLSTLGFNITAELITETVNLSSSLNLDI
HQMLGSEFCVLVAEGEAERRSLTKGRG
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgagagaaatacagctctcgttgaacaaaacccagaaaatcaggctccagagagcactg
gaaaagctcgagtctttgtcttcaaaggtgaattcccatgcctctgtcaccatcgccgat
tccatccctgtcagctacgaagatggcgtactcaagggtcatggaaccttggacttcaat
ggagaagtgatttcgacggtctgtggcgtggtcgagcgcgtgaacaagctcgtatatgtt
cgcacgttgcgggccaagtacaagccagaggtcggagatatcattgtggggcgtgttagc
gaggttgctcaaaagcgatggaggttggacataaattatagccaggatgcagttttgatg
ctttcttcaatgaacttaccagatggtatccagagacgacgaactgctttggatgaactc
aacatgcgcagtatttttgaagaggatgatgttatttgtgctgaagtccgtggtttccaa
catgatggcttacacctccaagcaagaagtcagaagtacgggaagcttgaaaggggtcaa
ttgctcacagttcccccttatctagtgaagagacgcaaacagcatttccaccatctagag
caatatggggttgacttaatacttggctgtaatggattcatctgggtcggtgagcacgtt
gaagccagagatgatatggtaggggatcaagagaaaaaacctgaatggcagaatactaaa
tctcaaaaaaattccatgagtcttgaagatcaagaaagaacttatactccaatagagaca
aggcagaacatatgtaggattgcaaatgcgatccgtgtgttgtctactttaggcttcaat
ataactgctgaattgatcacggagacagtaaacttgagcagctccctgaatcttgatatt
catcagatgcttggttcagagttctgtgttctggttgccgagggagaggccgagcggaga
agcttaactaaagggagggggtga
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