Carya illinoinensis (pecan): 122319149
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Entry
122319149 CDS
T08745
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03013
Nucleocytoplasmic transport
cill03015
mRNA surveillance pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122319149
09122 Translation
03013 Nucleocytoplasmic transport
122319149
03015 mRNA surveillance pathway
122319149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122319149
03041 Spliceosome [BR:
cill03041
]
122319149
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122319149
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122319149
Spliceosome [BR:
cill03041
]
Complex C
Other components
EJC/TREX
122319149
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122319149
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Helicase_C_2
Utp25_C
Motif
Other DBs
NCBI-GeneID:
122319149
NCBI-ProteinID:
XP_042993023
LinkDB
All DBs
Position
8:1241603..1248253
Genome browser
AA seq
427 aa
AA seq
DB search
MGETRENDGYEEELVDYDDEEAHAPTSAVKVNGEGAKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVSAIVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILAL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KRFMQEPMEIYVDDEAKLTLHGLVQHYIKLSESEKNRKLNDLLDALDFNQVVIFVKSVNR
AAELNKLLKECNFPSICIHSGMSQEERLTRYKNFKEGQSRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNNVQMRFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaccagggagaacgatgggtacgaggaagagcttgttgactacgacgacgaa
gaagcccatgccccaacttccgcggtcaaagttaacggcgaaggcgccaagaagggctat
gtaggaattcacagttcaggattcagggacttccttttgaagccagagcttcttcgagct
attgtggactcgggatttgagcatccttctgaagtgcaacacgaatgcatccctcaagcc
atcctgggcatggatgtcatttgccaagctaagtctgggatggggaaaaccgctgttttt
gttctttcaacattgcagcagattgaacctgttgcaggacaagtttctgcaattgtgctg
tgtcatacaagggagttagcataccagatttgtcacgagttcgagagattcagtacgtac
ttacccgatctcaaggtggctgtcttctatggtggtgtcaatatcaaagttcacaaggat
ttgctgaaaaacgaatgcccccacattgttgttggaacacctggaagaatattggcattg
gcaagagataaggacctttctttgaagaatgtgaggcattttattcttgatgaatgtgac
aagatgcttgaatcacttgacatgaggagagatgtgcaggagattttcaagatgactcct
catgataagcaagttatgatgttctctgcaacactcagcaaagaaatccgcccagtttgc
aagagatttatgcaagaaccaatggaaatttatgtcgacgacgaggcaaagttaaccctt
catggtcttgttcagcactacatcaaattgagcgagtcggagaaaaaccgcaagttgaat
gacctccttgatgcattggactttaatcaagttgttatctttgtcaaaagtgtcaacaga
gcagctgagcttaacaagctacttaaggagtgcaatttcccctctatatgcatccattct
ggcatgtcccaagaggaaaggttgacacgctacaagaattttaaggaggggcagtcgagg
attcttgtggccacagacttggttggtagggggattgatattgaacgtgttaacattgtc
attaattatgacatgccagattctgcagacacttatctccacagggttggtagagctggt
cggtttggaaccaaagggcttgcaattacattcgtttcatctgcttccgattcggaggtt
ctcaataatgttcaaatgaggtttgaggtggatataaaggaacttcctgagcagattgat
acctctacatacatgccatcataa
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