Carya illinoinensis (pecan): 122319316
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Entry
122319316 CDS
T08745
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122319316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122319316
03009 Ribosome biogenesis [BR:
cill03009
]
122319316
Enzymes [BR:
cill01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122319316
Spliceosome [BR:
cill03041
]
Complex A
U2 snRNP components
U2 related factors
122319316
Complex B
122319316
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
122319316
Ribosome biogenesis [BR:
cill03009
]
Eukaryotic type
90S particles
Helicases
122319316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
ABC_tran
T2SSE
AAA_7
Flavi_DEAD
AAA_33
FtsK_SpoIIIE
AAA_30
AAA_29
TsaE
NACHT
Motif
Other DBs
NCBI-GeneID:
122319316
NCBI-ProteinID:
XP_042993265
LinkDB
All DBs
Position
8:complement(10984780..10989919)
Genome browser
AA seq
733 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSLSAKIGKSNGGGGVAAAAVSNNGISSGINRWTGRAYSQRYH
EILEKRRSLPVWHQKDEFLQVLKANQTIILVGETGSGKTTQIPQFVLEAVDIETPDKRRK
MMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREA
MTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRSDLKVVVMSATLEAEKFQGYFN
GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDAC
RKISKEVANLGDQVGPVKAVPLYSTLPPAMQQKIFEPAPPSAKEGGPPGRKIVVSTNIAE
TSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLY
TERSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNY
LGALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSTEFNCSNEILSISAMLSVPNCFVRPRE
AQKAADEAKARFGHIDGDHLTLLNVYHAYKQNSEDPSWCYDNFVNHRALKSADNVRQQLV
RIMARFNLKLCSTDFNSRDYYINIRKAMLAGYFMQVAHMERTGHYLTVKDNQVVHLHPSN
CLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLIDVAPHYYDLTNFPQCEAKRVLERLYK
KREKDKEESKNRK
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggaaaggaagagaaaggtgagcttgttcgacgtggtcgacgagacctcgttg
tcggcgaagatcgggaaatcgaacggcggaggaggagtagctgcggcggcggtgagcaac
aatggtatcagtagtgggatcaataggtggacagggagggcgtactctcagaggtaccat
gagatacttgagaagaggaggagcttacccgtgtggcaccagaaggatgagttcttgcag
gtcctcaaggcgaatcagacgattatcctcgtcggtgagactggcagtggcaaaaccacg
cagattccccaattcgttttggaagctgttgatatagaaactccagataagcgcagaaag
atgatgattgcatgcacccaacctcgtagggttgctgcaatgtctgtttcacgtcgtgtg
gccgaagagatggatgtaactattggagaagaggttggttatagcatccgttttgaagac
tgcagtagtgcaagaacagttttgaagtatctaacagatggtatgctcttacgagaagcg
atgacagatccacttctagaacgctacaaagttataatacttgatgaggctcatgaaaga
acattggcaacggatgttctatttgggcttctgaaggaagtattgaaaaatagatccgac
cttaaggtagttgtgatgagtgcaactcttgaagctgaaaagtttcagggttattttaat
ggtgcaccgcttatgaaagttcctggtaggcttcatccagtggagatattctacacccag
gaacctgaaagggactatctggaggcggcaattcgaacagtagtgcagatccacatgtgt
gaacctcctggagatatacttgtgttcctcactggcgaggaggagatagaagatgcatgc
cgaaaaatatcaaaagaggttgcaaatctaggtgaccaggtgggacctgtgaaagcagtg
cctttgtattctaccctccccccagcaatgcagcagaagatatttgaaccagctccacct
tcagcaaaggagggtggtcctccaggaaggaagattgtggtgtcaacaaacattgcagaa
acttctctgaccatcgatggtatagtatatgttattgaccctgggtttgcgaaacaaaaa
gtttataacccaagagtgcgtgttgaatccttgttggtatctccgatatctaaagctagt
gcacaccagagatcagggcgtgctggaagaactcagcctggtaaatgctttagactctat
acggagagaagcttcaataatgatcttcagccacagacctatccagaaatattgagatca
aaccttgcaaatactgttcttaccttgaaaaaactggggatagatgatcttgtgcatttt
gattttatggacccacctgccccggagacattgatgcgcgcactagaggttttgaattac
ttgggtgcgttagatgatgatggaaatttaacaaagcttggggaaattatgagtgagttt
ccattagatcctcagatgtcaaagatgctcgttgttagcactgaattcaattgttcaaat
gaaattctttcaatctctgccatgctttcagtacccaattgctttgtccggcctagggag
gcacaaaaagctgctgatgaagcgaaggctaggtttgggcacatcgatggagatcacctc
acactcttgaatgtatatcatgcttacaagcaaaacagcgaggatccctcttggtgttat
gataactttgtcaatcatagggcattgaagtctgctgataacgttagacaacagctagtg
cggatcatggccaggtttaacctcaagttgtgtagcactgatttcaacagccgtgactac
tacatcaacataaggaaggctatgctagcagggtacttcatgcaggtagctcacatggaa
cgtactggacactacttgacagtgaaagacaaccaagtggtgcacttgcatccatcgaat
tgcttggatcacaagccagagtgggtaatttataatgagtacgtgctaaccagcaggaat
ttcattcgcacagtgacagacattcgtggtgaatggctgattgatgtagcaccacactat
tatgatctgacaaacttccctcagtgcgaggccaaacgtgttcttgagaggctttacaag
aagcgggagaaggacaaggaggagagcaagaacagaaaatga
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