Carya illinoinensis (pecan): 122319382
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Entry
122319382 CDS
T08745
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122319382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122319382
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122319382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
GTP_EFTU_D4
MMR_HSR1
Zn_ribbon_RanBP
RUBY_RBDX
Motif
Other DBs
NCBI-GeneID:
122319382
NCBI-ProteinID:
XP_042993369
LinkDB
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Position
8:1900690..1907809
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AA seq
657 aa
AA seq
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MPRKVSYGVDYDEEYDDYEDYDVDCDLDVEDNGNVPQSKKETIKRGIWRCSICTYDNDES
LSVCDICGVLRNPLINYGPGSDKNTADFKFDAPSPHDLVSDGLRSSKKVSKANSTDLKSS
RVSLSINENIGVVGIKSSADRADISSSLMPKGRHHSEDVINYSKNGTGNMPLSDKSSVRP
AALTIKGRHDAIDESSSSKNGNARVTCSNTEYKPENWMLPGQAEDTLNQLNLAIVGHVDS
GKSTLSGRLLHLLGRISQKELHKNEKEAKLQGKGSFAYAWALDESTEERERGITMTVAVA
YFDSKKYHVVVLDSPGHKDFVPNMISGAAQADAAVLVIDASVGSFEAGMDSAKGQTREHA
QLIRSFGVDQIIVAINKMDAVDYSKERFDLIKQQLGTFLRSCGFRDSSIILIPLSAMENQ
NLVASPSDVRLLSWYHGPYLLDAIDSLQPPMRDFSKPVLMPICDVLKLSLGQVSACGKLE
AGALRSGSKVLVMPSGNVGIVRSLERDSHACSFARAGDNVAVSLQGIDGSLVTAGGMLCH
PDFPVAVAKHLELKVLVLDVTTPILIGSQLEFHVHHAKEAARVVRMLSLLDPKTGKVTKK
APRCLTTKQTAVVEVALRGPVCVEEFSSCKALGRVFLRALGRTIAVGIVTRIIEEQD
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtaaagtgagttatggagttgattatgatgaagaatatgatgactatgaagat
tacgatgttgattgtgatttagatgtagaagacaatggcaacgtacctcagtcgaagaaa
gaaactattaagcgtgggatttggcgttgctccatctgcacgtatgataatgatgagagt
ttgtctgtatgtgatatttgtggggttcttcgtaatcctttgatcaattatggtcccggc
agtgataagaatacagctgatttcaagttcgatgctccctccccacatgatttggtttct
gatggactgcgttcctccaaaaaggtttcaaaagccaactctaccgacttgaaatcttca
agagtttccttaagcataaatgagaatattggtgtagttggcataaaatcaagtgctgac
agggcagatatctcatcttcattgatgccgaaaggcagacatcatagcgaggatgtgatc
aattattcaaagaatggtacaggcaacatgccattgagtgataaaagctctgttaggcca
gctgcattgactataaaaggcagacatgatgcaatagatgagagcagtagttcaaaaaat
ggtaatgccagagtgacttgttcaaatactgaatataaacctgaaaattggatgctccct
ggccaagctgaagatacattgaatcaactgaatcttgcaattgttggtcatgttgattct
ggaaaatcaacactctctggtagactactacaccttttagggcgaatatcacaaaaagag
ttgcacaaaaatgaaaaggaggctaagttacagggcaagggctcctttgcttatgcttgg
gctttggatgagagcactgaagaaagggaaaggggaataactatgacagtggctgttgca
tattttgattccaaaaagtatcatgttgttgtgcttgactcaccaggccataaggatttt
gtaccaaacatgatatctggggcagcacaagcggatgctgcagttcttgtcatagatgcc
tcagttggttcgtttgaggctggcatggacagtgctaagggtcaaacacgggagcatgca
caacttatcagaagttttggtgttgatcaaattatagttgcaattaacaaaatggatgct
gtggattactcaaaggaacgtttcgatttgattaaacagcaacttggaacatttctccgt
tcttgtggttttagagattcttctataatattgatcccgttgagtgccatggaaaatcaa
aatttggtggcgtctccttctgatgttcgtttgctgtcctggtatcatggaccttatctg
ctggatgcaattgattccctccaacctcctatgagagatttctcaaagcctgtacttatg
cccatatgtgatgttcttaagttgtcactagggcaggtgtctgcctgtggtaaactagaa
gctggagctctccgaagtggatccaaggttctagttatgccatcaggaaatgtagggata
gtgcgttccttagaacgtgattctcacgcttgttcctttgcaagagctggagacaatgtg
gctgttagtctgcaaggcattgatgggagccttgtgacggcagggggcatgctatgtcac
cctgattttccagttgccgttgcaaagcatttggaattgaaagtccttgttttggatgtt
accaccccaattttaattggctcccagttggaatttcacgtgcaccatgcaaaggaagct
gcaagagtggtcagaatgttgtctttacttgatccaaagactggcaaggtgacaaagaag
gcacctcgttgtcttaccacaaagcagactgctgttgttgaggtggctttgcgaggccct
gtgtgcgtagaagagttttcaagttgtaaagctcttgggagagtgtttctaagagcatta
ggaagaacaattgctgttgggattgtaacccgaataattgaggagcaggattag
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