Coccidioides immitis: CIMG_00540
Help
Entry
CIMG_00540 CDS
T01114
Name
(RefSeq) transcription elongation factor spt6
KO
K11292
transcription elongation factor SPT6
Organism
cim
Coccidioides immitis
Brite
KEGG Orthology (KO) [BR:
cim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cim03021
]
CIMG_00540
03036 Chromosome and associated proteins [BR:
cim03036
]
CIMG_00540
Transcription machinery [BR:
cim03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
CIMG_00540
Chromosome and associated proteins [BR:
cim03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
CIMG_00540
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HTH_44
HHH_7
Spt6_S1
YqgF
SPT6_acidic
Tex_central_region
HHH_3
HHH_9
SH2
S1
Tex_YqgF
B12-binding
Motif
Other DBs
NCBI-GeneID:
4566614
NCBI-ProteinID:
XP_001246769
UniProt:
J3KH82
LinkDB
All DBs
AA seq
1425 aa
AA seq
DB search
MSAAELLENEALLDDEENDEDYDEETGEVARGTADRNGHYDDSSEEEEDEDEDAARAVRE
GFIVDEDEEEEERSERRREKKKRRREERALEDEDLDEEDIYLIGENNPDFEPPVSYESKF
KRLKRGHKGDRDRAVSQGINDIFNSDEEEDEVDRYRMGARDRRGLHDDLDDFIEEDVFSD
EERERMREDEEIARPVKKGISGLAVTEATGLDEAALEDMRAAFGDGTDYLFALEMEEDED
EEERGDEEKPLDLKDVFEPSQLAEKMMTEEDNEIRFTDEPERYQIARKPYKHVILSEEQF
KEEAIWISNLMLLKKRLEPDLREPFQRAIVKVLEFMVTDDWEVPFIFQHRKDYLIHAAKV
PMSPSAPNPDGQDYVIRAEKLLNMTDLWDIFEYDLKFRALVDKRNILQRTYDNLKNVANV
KDEVFEQMLPAVVTMEELQDLQDYIYFEYSSELKDVAMVNGNGENGAVHQRRKAATKTFY
ERIRNSKAYGLVRAFGITPDGFAQNAMKEAKRHHIDDPTELPEDMADGLLDTHFANGLHA
LKAAKTMFAEQLIMSPKVRKELRRAFYMNGVIDCFRTEKGLKKIDEHHPYYEFKYLRNQQ
LSDIARRPELFLRMLKAEEEGLVDVNVRFQNFDNYKKRLYRDIQSDNFSEVADAWNKARK
EVLDMALARLDKIMSRGVKENIKTECENHVAKECREAFSLRLDQAPYKPKGMILGTIPRV
LTLSAGAGIIGKDPIYWAWVEEDGRVLENGKFTDLTLGDPDRMISDGRDVNSLIDLVERR
KPDVIGISGMSPETRKLYKQLAELIDAKNLRSSPYTNDNDDEVSDPLEVVIVNDEVARLY
HTSDKARSEHPGLHPLTIYCVSLAKYLQNPMKEYASLGRDIVSIQFKPGQQLISQEKLLK
QLESALVDMVNLCGVDINEAVNDPATANLLTYVSGLGPRKASQLLKIINMNGGVVNNRME
LLGVNAQYPAMGVKVWNNCASFLYIDYDTADPDTDYLDNTRVHPEDYDIGRKMAADALEL
DEEDIKAETDENGPGAIVRKLVKEDAQEKVNDLILEEYAEQLEKNLNQRKRATLETIRAE
LQQPYEELRKQFVFLSTDAIFTMFTGETADTLAEGMVVPVTIKRITDDHIDGKLDCGVDV
LIPEMELTDRYDIPVRSLYSIHQTVPAKLLYLNRKAFIANASLREDQVIRPYRREFDHMR
DEWDDKQEHQDQEAMKEETKTSTRTLRVIKHPLFRPFNGPQAEEFLASQSRGDAVIRPSS
KGPDHLAVTWKVSDGVYQHIDVLELDKENEFSVGKILKIGGKYSYSDLDELIVNHVKAMA
RKVDDMTIHEKYQSGSKEATERWLTTYTTANPTRSAYAFCIDPKHPGYFHLCFKAGQNAS
MNSWPVKVIPQGYELQRNPYPDMMALCNGFKTMYANVLAGKKGRR
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgccgagcttttagagaatgaggccttgttggacgatgaggaaaatgatgaa
gactacgacgaggagaccggtgaagtagctagaggcactgctgatcgaaatggccactat
gacgattccagtgaggaggaagaagacgaagatgaagacgccgctcgtgctgtccgcgag
ggtttcattgtcgacgaagacgaagaagaggaagagaggtctgaaagacgacgagaaaag
aaaaagcgacgccgtgaagagcgtgcactcgaggatgaggacctggacgaggaagatatc
tatcttatcggggagaataacccggactttgaacctcctgtttcttatgagtcgaaattt
aagcggctgaagcgcgggcataaaggtgatcgagaccgtgccgtgtctcagggaatcaac
gatatattcaactccgacgaagaggaggatgaggtcgaccgatatcggatgggtgcccga
gatagaagggggcttcacgatgacctcgatgatttcatcgaagaggatgtgttttccgac
gaagagcgcgagcgcatgcgggaagacgaagagatcgctcgcccagttaaaaaaggaatc
tctggacttgctgttacagaggcgactggcctcgatgaagctgccctcgaggatatgcgt
gctgctttcggtgatggaaccgattatctcttcgcccttgaaatggaagaagatgaagat
gaagaagaacgtggggatgaagaaaagccacttgacctaaaagatgtttttgagccatca
caactggctgaaaagatgatgacggaggaagacaacgagatccgctttactgacgaaccc
gagcgctaccagatagcaagaaagccttataagcacgtcatcctgagcgaagaacaattt
aaggaagaagccatatggatttcaaatcttatgttactgaaaaagcgcctggaaccagac
ttacgcgagccattccagagagctattgtcaaggtccttgaatttatggttactgatgac
tgggaagtgccgttcatctttcaacatcgcaaggattacttgattcatgcggcaaaggtt
ccaatgtcccctagcgcacccaatcccgatgggcaggactacgttattagagcagagaaa
ctcttaaacatgactgatctgtgggatatcttcgagtatgacctaaagttccgcgcactt
gttgacaagaggaacatccttcagcggacctatgacaaccttaagaacgtcgcaaacgtc
aaagacgaagtgtttgagcagatgttacctgctgtggtgaccatggaggaacttcaggac
ctccaggattatatctattttgagtactcatccgaacttaaagatgttgcgatggtgaat
ggaaatggagagaatggggccgttcatcaacgccgaaaagccgcgaccaaaactttctat
gagcgtatccgcaatagcaaggcttacggtcttgttcgtgcgttcggaattacaccagac
ggatttgcccaaaacgctatgaaggaagcaaagagacatcatattgatgaccccactgag
ctacccgaagatatggcggacgggctccttgacactcactttgcaaacggtttacacgcg
ctcaaggctgccaagacaatgtttgcagaacagttgataatgagcccaaaagtaaggaag
gaattaagacgagccttctatatgaatggcgttatcgattgtttcaggactgaaaagggc
ctaaaaaagattgatgaacatcacccttattacgaatttaagtatttgcgaaatcagcaa
ctgagtgacattgcacgccgaccagaactattcctgcgcatgctgaaagcggaagaagaa
ggcttggtggacgtcaacgttcggttccaaaattttgataattataagaaacgactttat
cgtgatatccaatccgacaacttcagtgaagtagccgatgcctggaacaaagcgagaaag
gaagtgcttgacatggcacttgcacggctcgacaagatcatgagtcgcggagtcaaggaa
aatatcaagactgaatgtgagaaccacgtcgctaaggaatgccgagaagctttctcctta
cgactcgatcaagctccgtacaagcctaaaggcatgatccttggcactattccccgtgtc
ctcactttatcagccggtgctggtatcattggcaaagacccaatatactgggcgtgggtt
gaagaggatggccgagtcttggaaaacggcaaatttaccgacctcactctcggtgatcca
gaccgcatgatttcagacggtagagacgtgaactctctcatagatctcgtcgaacggcgc
aaacctgatgtgattggcatttccgggatgtctccagaaacccgcaaactttacaagcaa
ctcgcagagctcatcgatgcaaagaatctccgcagctcgccatataccaacgataatgat
gatgaagttagcgatcctctcgaagtagtcatagtgaacgacgaagtggcaagactgtat
cataccagcgacaaggccagatcagagcaccccggtcttcacccattgaccatctactgc
gtttctctcgccaaatatctacagaatccaatgaaagagtacgcttcgttaggacgggac
atagtgtctattcaatttaaaccaggccagcaacttatctctcaggagaagctcttgaag
caactcgaaagtgctttggttgatatggtgaacttatgtggtgtggatatcaatgaagct
gtcaatgatccggctaccgctaaccttctcacttatgtgagcggtctcggccctcgaaag
gcctcccagttgctgaaaatcatcaacatgaacggtggtgttgtgaataaccgcatggag
ttactaggagtcaacgcgcagtatcctgcaatgggcgtgaaagtatggaacaattgtgcc
agtttcctctacatcgactacgacacggccgatcccgacactgattatttggacaatact
cgtgttcatccagaagactatgatattggtcgcaagatggccgccgatgcgctcgaactc
gatgaagaagatatcaaagcggagacagatgagaacgggcccggcgctatcgttagaaag
ctcgttaaggaggatgctcaagaaaaagtcaacgaccttattctggaagagtatgccgag
caactcgaaaagaatcttaaccagagaaaacgcgctactcttgagactatacgtgctgaa
ctacagcagccttatgaggaattacgaaagcaattcgtcttccttagcacagatgccatc
tttacaatgtttaccggcgagactgcggacaccttggccgaaggcatggttgtacctgtc
actatcaaacgaataaccgacgaccacattgacggcaaacttgactgtggagttgatgtc
ctcatacccgagatggagctcaccgaccgatatgatatccccgtccgaagtctatattcc
attcaccaaactgtccctgcgaaactgctctacttgaaccgcaaagctttcattgccaac
gcatctctccgcgaagaccaggtcattaggccgtatcgccgcgaattcgatcatatgcgc
gatgaatgggatgacaagcaagagcaccaagatcaagaagcaatgaaggaggagactaag
acgagcactcgtacactcagagttattaagcatccgcttttccgcccattcaatggtcct
caggctgaggaattcctcgcttcgcaaagtcgtggagacgcagtcattcgaccttcctct
aagggccctgaccatctcgcagtaacatggaaggtgtcagatggagtataccagcatatt
gatgtgttagaacttgacaaagaaaacgagttctccgtcggcaaaattctcaaaattggc
gggaagtattcgtacagcgatctcgacgagttgattgtcaatcatgtcaaggccatggca
agaaaggtggatgatatgacaatccatgagaaatatcagtccggctcaaaagaggctaca
gaacgttggttaacaacatacacaaccgccaaccctactcgttctgcctacgccttttgc
atcgaccccaaacacccgggctacttccacctgtgcttcaaggcgggccaaaatgcgtca
atgaacagctggccagtaaaagtgattccccagggatacgaattgcaacggaacccatat
ccagacatgatggcgttatgcaacggattcaagacgatgtatgcgaatgtgttggccgga
aagaagggacgaagatga
DBGET
integrated database retrieval system
