Coccidioides immitis: CIMG_00939
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Entry
CIMG_00939 CDS
T01114
Name
(RefSeq) mRNA splicing factor RNA helicase
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
cim
Coccidioides immitis
Pathway
cim03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cim00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CIMG_00939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cim03041
]
CIMG_00939
Enzymes [BR:
cim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CIMG_00939
Spliceosome [BR:
cim03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CIMG_00939
Complex C
U4/U6.U5 tri-SnRNP related factors
CIMG_00939
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_N
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
PWI
SRP54
AAA_30
nSTAND3
T2SSE
Cas3-like_C_2
AAA_16
Sigma54_activ_2
ABC_tran
Motif
Other DBs
NCBI-GeneID:
4567242
NCBI-ProteinID:
XP_001247168
UniProt:
A0A0E1RZI4
LinkDB
All DBs
AA seq
1106 aa
AA seq
DB search
MDTRTYVSDSLLRLTGASDPTVIDFILATTSSAKSPTSLREKLEPFLDASAGDIESFVSE
LWSRAGLKGSAGKSEKQNKPEDSTKKRYRLVEMEDGTVDHPGLGPTIDVEKSRRRDKSER
NGDSRRQSDREDKRKRDRDGEISERHRSKKLRRIDKRDFEDRWGDEEIPGDELQEQEPVD
DLVEGSPRRRGRSPSEVSVSSDLDEETKRERARQRDLKERDEFAKRLAKKDEQKSKKIVE
DRSSTKDSDVARRRALAEDAAAREAAMPDLRLRSRQEYLKKREAERLALLRKQVAEETAE
LRENPNLTRREKEDFAKNREVLRLAEERLRIDDHRDGYMLPEDYITEKGKIDRKRKEEAL
YKRYVDRDERGQERFITEHEEWENEQTAKAKAQITKAEFVDEGDYEYVFDDAQKINFIMD
SKLEGDRKPLTKEQRLLAQQIDAAEKKAASIEETRKSLPIYQFRDELLQAVADHQIIIIV
GETGSGKTTQIPQYLHEAGYTKGGMKIGCTQPRRVAAMSVAARVAEEMGVKVGNEVGYAI
RFEDATSDKTILKYMTDGMLLRELLTEPDLSQYSALMIDEAHERTVPTDIACGLLKDIAK
ARPDLKLLISSATIDAQKFQKYFDDAPIFNIPGRRYPVDIHYTSQPEANYLAAAITTIFQ
IHITQGKGDILVFLTGQEEIEAAEQNLQETARKLGGKMPEMIICPIYANLPSELQTKIFE
PTPPGARKVVLATNIAETSLTIDGIVYVIDPGFVKENVFNPRTGMESLVVTPCSRASAGQ
RAGRAGRVGPGKCFRLYTKWAYHNELEANTTPEIQRTNLSGVVLALKSLGIDDLLDFDFM
DPPPAETLIRALEQLYALGALNDHGELTKVGRQMAEFPTDPMLAKAILAADKYGCVEEVL
SIIAMLGEASALFYRPKDKRIHADSARARFTIKDGGDHLTLLNIWNQWVDSDFSYVWARE
NFLQQRSLTRARDVRDQLAKLCDRVEVTVNTAGANNLVPIQKAITAGFFPNAARLQRGGD
SYRTVKNGQTVYLHPSSTLFDVNPKWVIYHELVLTSKEYMRSNMPLQPEWLVELAPHYHK
QKDLESLGVDKKVPKGKGAVGEKSKI
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atggacaccaggacctatgtatcggattcccttctgcgtctgacgggcgcctcagatcct
actgttatcgactttattcttgcgaccacatcctccgcaaaatcacccacctcgctacga
gaaaagctcgaacctttccttgatgccagcgctggagatatcgaatcattcgtctcggag
ctatggtctcgagccggtctcaaaggcagtgctggaaagtcggagaaacagaacaaaccc
gaggatagtacgaaaaagagataccgactagttgaaatggaggatggcacggtagaccac
ccgggcttaggaccgaccatagatgtggagaaatcaaggcgcagagacaaatctgaacgt
aacggcgacagcagacggcagagtgacagagaagacaagaggaaaagggaccgagacgga
gaaatctcagagcgtcaccgttcgaaaaagttacgtcggatcgacaagagggactttgag
gatcgctggggtgatgaagagataccgggggatgagctacaggagcaggagccagttgat
gatcttgttgagggatctccaagacgaagaggccgttcaccctcagaagtctcggttagc
tctgatcttgatgaggagacgaaacgagaaagggcaagacagcgtgatcttaaagagcgt
gatgaatttgcgaaacgactagcgaaaaaggatgagcagaagtccaaaaagattgtggaa
gatcgttcgtctacaaaggatagtgatgtggcgcgaaggcgcgctctagccgaggatgcc
gcagcgagggaggctgcaatgccagacctcaggcttcgttcacgccaagagtacctgaag
aagcgcgaagctgaaaggctggcgttgcttcgcaagcaagttgccgaagaaaccgctgag
ttgagggagaaccctaatttgactcgacgggagaaggaagatttcgcgaaaaatcgtgag
gtcctacgacttgcagaggaaaggctgcgaatagacgatcatcgtgatggctatatgcta
cccgaagattatatcacggagaaagggaaaatagatcggaagcgcaaggaagaagcactc
tacaaacgatatgttgacagagatgaacgcggtcaggaacggttcattacggagcatgaa
gagtgggagaatgagcagacagcaaaagcaaaggcacagatcaccaaagcggaatttgtt
gacgagggagattacgagtatgtatttgatgacgcccaaaagattaatttcattatggat
tcgaagttagagggtgatcggaagcccctgacaaaggaacaacgattattagcgcagcaa
atagacgcagctgaaaagaaggcagcgtcaatcgaggaaactcgcaaaagcctgccaata
tatcagtttcgcgacgagttactgcaagccgtggctgatcatcagatcattattatagtc
ggcgagacggggagtggaaagacaacgcagattcctcagtatcttcatgaagctggatac
acaaaaggtggaatgaaaattggctgtacgcagcctcgtcgagtagctgccatgagtgtc
gcggcacgtgtcgcagaagaaatgggagtgaaagtaggcaacgaagtcggttacgctata
cgttttgaagatgccacaagtgataaaacgattctaaaatatatgacagacggtatgctc
ttgagagaactactaacggagcctgaccttagtcagtactctgccttgatgatcgacgaa
gcgcacgaaagaacagttccaacagatatcgcctgtggtctgctcaaagatatcgcgaaa
gcaaggccagaccttaaactgctaatttcttcggccactattgacgcgcaaaagttccaa
aaatacttcgatgatgctccaattttcaacattcccggtcgcaggtatcctgtcgacata
cactacacatctcaaccagaagctaactacctcgcggcagccattacgaccatatttcaa
atccatattacccaaggcaagggcgatattctcgttttcttgactggtcaagaagagata
gaagctgcagaacaaaatctccaagaaacagcgagaaaactaggaggtaaaatgccagaa
atgataatctgtcccatctacgccaatttgccttcagaattacagaccaaaatatttgaa
cctactcctcctggtgcgaggaaagtggttttggccacgaatattgctgaaaccagtttg
actatcgacggaatcgtgtatgttattgaccctggttttgttaaggagaacgtattcaat
cctcgcacaggaatggaaagcttggttgtcactccatgctctcgagcatctgcaggccag
agagcgggaagagctgggcgtgttggacctggcaaatgcttccggctctatacaaagtgg
gcttaccataacgaactcgaggcaaataccacgccagaaatacagcgcaccaatctgagt
ggtgtggtgctggctctgaaatcccttggaattgacgatctacttgattttgattttatg
gatccgccaccagcagaaaccctcatccgcgcgcttgaacaactctatgcactcggggct
ttgaatgaccatggagaactcaccaaagttggaagacaaatggcagaattccccactgac
cccatgctggccaaggccatccttgcggccgataaatacgggtgtgttgaagaggttctg
tcaattatcgccatgcttggcgaagcgagcgcactgttttacaggcctaaggacaaaagg
atacatgcggatagtgctcgagctcggttcacaataaaggatggcggtgaccacttgaca
cttctcaatatttggaatcaatgggtcgattctgacttcagctatgtttgggcgagagaa
aatttccttcagcaacgaagccttacgcgtgctcgtgacgtccgggatcaactggccaaa
ttatgtgatcgtgttgaagtgactgtaaacactgctggtgccaacaaccttgtccccatt
cagaaagcaatcacagcaggtttttttcccaatgcggcacggctacagagaggtggtgac
agctatcggacggttaagaacgggcagactgtctatctgcatccatctagtactctgttt
gatgttaatcctaaatgggtcatttatcacgagctggttctcacaagcaaggagtatatg
cgaagcaacatgcctttgcagccagaatggctggttgagttggcgccgcattatcacaaa
cagaaggatttggagagcttgggcgtggataaaaaggtacccaagggaaagggagccgtt
ggagagaaaagcaagatatga
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