Coccidioides immitis: CIMG_01358
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Entry
CIMG_01358 CDS
T01114
Name
(RefSeq) CCR4-NOT core complex subunit Not4
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
cim
Coccidioides immitis
Pathway
cim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIMG_01358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cim03000
]
CIMG_01358
03019 Messenger RNA biogenesis [BR:
cim03019
]
CIMG_01358
04121 Ubiquitin system [BR:
cim04121
]
CIMG_01358
Enzymes [BR:
cim01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
CIMG_01358
Transcription factors [BR:
cim03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
CIMG_01358
Messenger RNA biogenesis [BR:
cim03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CIMG_01358
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CIMG_01358
Ubiquitin system [BR:
cim04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
CIMG_01358
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-RING_2
Baculo_IE-1
Rtf2
zf-C3HC4_3
NS3
Motif
Other DBs
NCBI-GeneID:
4566714
NCBI-ProteinID:
XP_004445813
UniProt:
A0A0D8JTA5
LinkDB
All DBs
AA seq
1494 aa
AA seq
DB search
MASRTQNDTVIDDDDEICPLCIEEFDLSDKNFKPCPCGYQICQFCYNNIKTHSEEGRCPN
CRRVYDENTIQYRVPDADELKADLALKHRKAAAAKKKEQEKREIEASSRKNLAGVRVVQK
NLVYVIGLNPTIRDENQLLQTLRGDQYFGQYGEIEKIVVSKAKPGGNPNQGIGVYVTFAK
KSDAASCIAAVDGSANGDRVLRAQYGTTKYCSSFLRNEQCNNRNCTFLHETGEDSDSFSR
QDLSSMNTISSQRPHPNYPNVSANQSRAYTPGSQSGPSSSLSMQRHTNKDEGTRMPANDS
PALPSSASWANKDALAHRTRRPSVAASCGTPSPKPATATIATKPEESRAATEKRTHQNVE
ESRQHTPTPGPSSRLEQRDSVSPRRPLSVSQDRGMVLYNLVKAINSPEFRFQFSAAGLSA
DELAFIENHPSLIDPYGGVKRRAMREKAEQERAKQEVEAKMLLHANQPEEETLEGGSSQL
GGEPEESHSGPGPAGRSGREQQAIQPPSQQATASSSAVGSPVSAGHQFQSLNVNGRALTP
LQQQQLMLLKSTTGQQSGLLDQLQTSSINGYDHNPLSRPSAFQNQMPPVGAISGHARQSS
RFSFANESNAKNPNHRLLSQQAAVMQASTTNPMATANAQQHGLSSHFFTSGVQGPPPGLK
TAGTPPVSGGGMFAQGHGFTSTMNNNLGLNVKQDGNADLMRELMRARSGTSGGGVQTLEA
TKLDLADPSILQARMHQSNATAVAGQGLYGSQGQVDEDFPPLAPPKSALDTRASSRSHIS
VESPVFSSRSGTPTVPPGLSFPHGHPAAGLIKESSVPSSPSPSKNHASISTVIAPPPGLT
PPQKVRDTVMPRVATPIIPESPTLKPDPASNPAEASAGSPEPEAVASLTKETQSPAPPKA
NKQSTEATSAKSGKGPSKESHSKPKPIKLDISFSATGRESASPSQNSAPYQLSALSTSIT
SSRPNTPGTVASRISESPAPRQPRVLRVVDTPKSETPPLQSSGAASGTTTAVKQRSRRPS
ISSVSRPATPAEISSEYDLYTSASASRANSPPPSRIGSAPVRAMSKNQAKKQRKLKAEQA
EAKKEDELTSTPVEDTVQAPILGRKRKTKKPSKRATDSTEDGQRASPGTNEDTQPKSGST
IVSKHVESGAKSSPTIEKVEEKKEAYEPWRLNNTLEQLMVDSEALGVPIKDLFLERTSPL
PTILAQLYQSGQLDLHVHALFNPPNLNQRVDMKCTAEDYEYLKRPIELTEDHRKMLLRGE
PVRINGGSDLLKHRCLITPKGCILRHLSAEEEDHYLDLEDSLASAIDSGHEYPAFIVTEP
DTTNRGGGLDALFATPEKFNIRWVDDEASRSGLITGTTEDSVILSHPSTQAPATTPPNVF
SALEADSARSTSWAIPSSTDPVSGTAPPRSSATTKSLMTGSTFGLDLEELMNVPDQELRS
MIEAAQRELELSRKDADVVDKKIMALVKRNKKLVQQALSAALEFVASSDAKTPT
NT seq
4485 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgagaacccaaaatgataccgttatcgatgatgatgatgagatctgccctctc
tgcattgaagaatttgatctttcggacaagaacttcaagccatgtccttgcggctaccaa
atatgtcagttttgctacaacaacatcaaaacccatagcgaggagggccgatgtcctaac
tgccgacgcgtttacgacgagaacacaatacaatacagagttcccgacgcagatgagctt
aaggcagacctggcgttaaaacaccgtaaggcggcggctgcaaagaaaaaagaacaagag
aagcgtgaaatcgaggcatctagtcgaaaaaatcttgcgggagtccgagttgtccagaag
aaccttgtctatgtcattggacttaatccaacaatcagggacgagaaccagttacttcag
acattgaggggggatcagtactttggtcaatacggtgagatagaaaagattgtcgtgagc
aaagcgaaacctggtggaaaccccaatcaaggaatcggagtgtacgtcacctttgcaaaa
aagagcgatgccgcatcatgcattgcggccgttgacggctccgccaatggtgatcgagtt
ctgagagcgcaatacgggacgacaaagtactgctcatcattccttcgtaacgagcagtgt
aacaacagaaattgcaccttcctgcatgagaccggagaagatagcgatagtttcagccgc
caagatctgtcctccatgaatacgatttcgtcgcagcgacctcatcccaattatcccaac
gtgtcggcgaatcagtctcgtgcatatacaccgggaagtcagtccggcccatcgagttcc
ctctcaatgcagcgacacactaataaagatgaaggaacacggatgcccgctaacgactcc
cctgccctcccatcttcagcgagctgggcgaataaagatgcccttgcacatcgaacaaga
cgccctagcgtggctgcgagttgcggcacaccgagccccaaaccggcgaccgcaacaatc
gcaaccaaaccggaggagtcgagggcggccaccgaaaagcgaactcatcaaaatgtggaa
gagtcgcgccaacacacaccaacaccagggcccagctcaaggttggagcaacgtgattct
gtatccccgaggagaccactgtccgtgtcccaagatcgcggcatggttttgtacaatttg
gtcaaggcgataaactctccagagttccgatttcagttctcagcggctggtctatcggct
gatgagcttgcatttatcgaaaatcatccgtctctcatcgatccatacggcggcgtgaaa
cgtcgcgctatgcgcgaaaaggctgaacaagaaagggcaaaacaagaagttgaggctaag
atgctactacatgccaatcaacccgaggaggagacccttgaaggtggtagttcgcagctt
ggcggtgaaccagaggagtcgcattctggcccgggacctgctggacgcagcggccgtgaa
caacaagccattcagcccccatcccaacaagcaactgcctcaagttctgctgttggttcg
cctgtttcagctggccaccagttccaaagcttgaacgtcaatggtcgtgcccttacccct
ctccaacagcagcagctcatgcttttaaagtcaaccactggccaacagagcggcttgtta
gaccaacttcaaacttcttccattaacggctatgatcataacccgctttccaggcccagt
gcgtttcaaaaccaaatgccgccagtgggtgcaatatcgggtcacgcacgacagtcctct
cggttctcctttgcgaatgaatcaaacgccaaaaatcccaaccataggctacttagccag
caggctgccgtgatgcaagcgtcgaccaccaacccgatggcgactgccaacgcacaacaa
catgggcttagtagccacttttttaccagtggcgttcagggtcctcctcctggcttaaaa
actgctggaacgccgcctgtcagtggagggggcatgttcgcccaaggtcatgggtttacg
agcacaatgaataataacttggggcttaacgtcaagcaagatgggaatgctgatttgatg
cgtgagctgatgcgtgcccggagtggtacgagtggtgggggtgttcaaactctcgaagca
accaagctagatcttgcggacccgagtatcttgcaggcgagaatgcaccaaagcaatgca
actgctgttgctgggcaggggctatacgggagtcagggtcaagtggatgaagactttccg
ccgctagcacctccaaagtctgcgctcgacacccgggcatcgtcccggtcccatatttcc
gtggaatcccccgttttttcgagtaggtctgggacgccaacagtgccccctggactgtcg
ttcccacacggccatccggcagcaggtctcatcaaagagtcgagtgtgccctcaagcccc
tctccatccaaaaaccatgcttccatttcaaccgtcattgcgccccctcctggcttaacc
ccaccccaaaaggtgagggacacggttatgcctagggttgctactccaatcattccagag
tccccaactttaaagccggatcctgcaagcaacccggcagaagcctcagcaggctcgcca
gaaccggaagccgtcgcatctctcaccaaagaaacccagtcccccgctccccctaaagct
aacaagcagtcaacagaagcaacctccgcgaagagcggaaaaggaccttccaaagaatct
cacagcaagccaaagcctattaaattggatatatcgttctctgcgactggccgagaatcg
gcttctccctctcagaattctgcgccctaccagctttctgcgctctctacatccattacc
agttcgcgaccaaatacccccggaacggtagcttctcgcatatccgaatctcctgctccc
cgtcagccacgggtgttacgtgtggtagacacccccaaatccgaaacgccacctctacaa
tcatctggagccgcatctggtaccactacagcggtaaagcaacggtcacgaagacctagc
atttcttctgtgagccgtccggctacgcctgcagaaataagttctgaatatgacctctac
acctctgcttccgcatctcgggctaactcgccgcctcccagtagaattgggtctgcccca
gttcgtgcgatgtcaaaaaatcaggcaaaaaagcagcgaaaactcaaagctgagcaggct
gaagcgaagaaagaagatgaacttacatctactcccgttgaggacactgtgcaggcacct
atccttggcagaaagcgaaagacaaaaaagccatcgaagcgagccacagacagcacagag
gatggacaaagggcttcacctggaaccaatgaggatactcaaccaaaatcaggtagtaca
atagtatccaagcatgtggaatccggagcgaaaagctcacccaccattgaaaaggtggaa
gagaaaaaggaagcctatgagccttggcgccttaacaacactctagagcaacttatggtt
gattctgaagcactgggtgtccctatcaaagacctgttccttgaaaggacgtctccactg
cctaccatactcgcgcagctttatcagtcgggacagctggatctgcatgtccacgcgctc
tttaaccctccaaatctcaatcaacgcgtggatatgaaatgcacagctgaagattatgaa
tatttgaagcgaccaattgaattgactgaagaccaccgcaaaatgctcctccgtggtgaa
cctgttcgcattaatggtgggtcagatctcttgaaacataggtgccttattactccaaaa
ggatgcatcttacgacatttatctgctgaagaagaagatcattacttggacttggaagac
agtctcgcctctgccatcgactctggtcacgaatatcctgctttcattgtcactgagccc
gacaccactaaccgtggtggcgggctggatgctttatttgcaacgcccgaaaagttcaat
attcgctgggtcgatgacgaggcttctcgaagcggtttgatcaccggaacaacggaagat
tcagtcatcttgtcgcatccgtcaactcaagcacctgccaccaccccaccaaacgtcttt
tctgcactcgaagctgactccgctcgatctaccagctgggcaattcccagcagcacggac
cctgttagtggcaccgctcctccacgctcatcggctacgacgaagagtctcatgaccggc
tctactttcggccttgatctcgaagagctaatgaatgtgcctgaccaagaattacgttcc
atgattgaagcagctcaacgtgagcttgagttgtcgcgtaaggacgcggatgttgtggat
aagaagataatggcgctggtaaagcgaaataagaagttggtgcagcaagccctctctgca
gcgctggagtttgtggcgtcctcggatgccaagaccccgacataa
DBGET
integrated database retrieval system
