Coccidioides immitis: CIMG_01924
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Entry
CIMG_01924 CDS
T01114
Name
(RefSeq) cleavage and polyadenylylation specificity factor
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
cim
Coccidioides immitis
Pathway
cim03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cim00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CIMG_01924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cim03019
]
CIMG_01924
Messenger RNA biogenesis [BR:
cim03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CIMG_01924
U7-dependent histone pre-mRNA processing factors
CIMG_01924
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Motif
Other DBs
NCBI-GeneID:
4567921
NCBI-ProteinID:
XP_001248153
LinkDB
All DBs
AA seq
1026 aa
AA seq
DB search
MFTFTPLLGAQYSHSKASQSILELDGGVKILIDVGWDETFDPSALKELEKHIPTLSLILL
THATPSHIGAFVYCCKTFPLFAQIPVYATYPVISFGRSLLQDLYSSAPLASTFLPTTSSI
SDSNGSGSVPTQDPTAPAGALTEGDTLNSTTAGKILLPSPTSEDIARHFSLIHPLKYSQP
HQPLPSPFSPPLNGLTITAYNAGHTVGGTIWHIQHGMESIVYAVDWNQARENVIAGAAWF
GSSGANRTDVIEQLRKPTALVCSAKGGDKFAPGGGRKKRDDLLLDMIRSCIARKGTVLLP
TDTSARVLELAYVLEHAWREAADGPDGENSLKNANLYLAGKKVHGTMRLARSMLEWMDES
IVREFEGGDGGESLGAGRSSGAASGQQSKGTPGQTSDKKSAGPHKGLGPFTFRHLKIIER
KTKLENILRSEGPKVIIASDTSLDWGFSKEILRHVAQGAENLVILTESSAGPANPSSSDS
TATIRDSLGHTIWQWYGERKDGVALEKASDGELLEQVHSGGRELTFIDVQKAPLDPDELV
IYQQYLATQRQLQNTAQGRGETDLENAPDALDDASSSTSSEDSESEQQGKVLNFSTTLAH
SNRSKLALTDADLGVNILLRRRNVYDYDVRGKKGRERMFPYVVPRRRGDQYGDFIRPEEY
LRAEEREEAQMQVQRGPDGRIQPAPGQKRRWGETGNGDKLGPSKRQQPQKDQQADMSLSG
SLDLNGVEDSEVSEEESAGQDVSGPTKATLVHSAVNMNARIAYVDFAGLHDKRSLEMLIP
LIQPRKLILIGGMKDETIALASECRSLLAANAGLDGATSKPGVDIFTPQLGDTVDASVDT
NAWMVKLSRALVRRLRWQNVRSLGVVALTANLQGPDTATQNDDVEEPSKKKAMLQKGADI
QGPNVVESRANEALIKKEVFPLLDVLPPNLAAATRSLSKPLHVGDLRLADLRKLMQASGH
SAEFRGDGTLLIDGFVVVRKSGAGKIEIESSARAATVNPKASKGDEGTFLAVKRKIYDCL
AVVARG
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgtttacgtttacgccgcttcttggggcccagtattcccactcgaaggcgtctcagtcc
attctggaacttgatggaggtgtcaagatcttaatcgatgttggatgggatgagacgttt
gatccgtcggctctcaaagaattggaaaagcatattccaacactctcactgatcctttta
acccatgccacaccgtcccacattggagccttcgtctactgttgtaaaacctttcctcta
tttgcccaaattccagtgtacgcgacatacccagttatatcatttggaaggtccctcctt
caagacctgtacagctctgctcccttggcttcgaccttcttgccgacaacatcttcgata
tcagattcgaacggctctggttcagtgcccacacaagacccaacagcccctgcaggcgct
ttgaccgaaggtgacactttgaattccactacagccggaaaaatcttactgccctctcct
acttctgaggacatcgctcgccatttctctcttatccacccgttaaaatactcacaaccg
catcagcctttaccatcgcccttctctcctccccttaacggtcttacaatcaccgcctat
aatgctggtcatacagtaggcggcacaatatggcacattcagcacgggatggaatcgatt
gtgtacgcagttgactggaaccaggcgagagaaaatgtgattgccggtgcagcttggttc
ggaagttccggtgcaaatcgcacagacgttatcgaacagcttcggaagccaacggctctt
gtctgcagtgcaaaaggtggtgataaattcgcccctggtggaggcagaaagaaacgagac
gacttgttgcttgacatgattcgaagttgcatcgcgagaaaaggaactgttttacttcct
actgacacaagcgcgcgagttttggaattggcctatgttctggaacacgcctggcgcgag
gcagctgatggtccagatggagagaattcgttgaaaaatgctaacttgtatttggcaggg
aaaaaggttcatggtactatgagacttgctcgtagtatgctagaatggatggatgaaagt
atagttcgtgagtttgaaggtggtgatggtggtgagtcccttggtgctggaagatcttca
ggcgcagcaagtggacagcaatcaaagggaactccaggccaaacgtcagataagaaaagt
gcagggccacataaggggcttgggcctttcacattccggcatctcaaaattatagaacga
aaaacaaaattagaaaatatcttacgatcagaggggccaaaagtcatcatcgcgtcggat
acatctctcgattggggtttcagcaaagagatattgcgacatgtagcgcaaggcgctgaa
aatttggtgattctcacagaatcatcagctggtccagccaacccgtcgtcgtcggatagc
accgcaacgattagagatagtttgggccataccatttggcaatggtatggagagcggaaa
gatggtgttgccctggaaaaagcttctgatggagagttattagaacaggttcacagcggt
ggaagagagttgacattcatcgatgtccaaaaagctcctctagaccctgacgagctagta
atttatcagcagtacctggccacccaaaggcagctacagaatacggcacaaggacgaggg
gaaacggaccttgaaaatgctccagatgcgctagacgatgcctctagctcgacgtcatct
gaagactccgaatcggaacagcaaggcaaagttttgaacttttcaactactcttgctcac
tccaatcgaagcaaactggctctaacggatgcggatttgggtgtgaacatccttcttcga
cgaaggaatgtgtatgactacgacgttcgagggaagaaaggcagagaaagaatgtttcca
tacgtcgttccgagaagaagaggtgatcaatacggagatttcatacgacctgaagaatat
cttagggctgaggagcgtgaagaggcgcaaatgcaggtacagcggggccctgacggccgg
atacagccggccccaggtcaaaaaagacgctggggcgagactggaaatggcgacaaactt
ggccctagcaaaaggcagcagccccaaaaagaccagcaggcggacatgtcattgtctggc
agtttggatttgaatggcgtagaagactccgaggtatctgaggaggagtccgcgggtcag
gatgtttcagggccgacgaaagctacgttggtgcattctgcagttaatatgaacgctcgc
attgcatacgttgactttgcaggtctgcacgataagcggagtttggagatgttaattccc
ctgattcagccgcggaaattgattcttatcggcggaatgaaagatgaaaccatcgcgctt
gcttcggaatgtcgaagtttgctagcggcaaacgctggtctggatggtgccacttcgaaa
ccaggcgttgatattttcacccctcaactaggagacaccgtggatgctagtgttgataca
aatgcttggatggttaagcttagccgcgcgttggttcgacgtcttaggtggcaaaatgtc
cggtcattaggagtggttgctcttaccgcgaatctgcaagggcccgataccgctacccag
aacgacgacgtcgaggaaccgtcgaagaagaaggctatgttgcaaaagggtgccgacatc
caaggaccaaacgtggtggaaagccgagctaatgaagccctgatcaagaaagaagttttc
ccccttctcgacgtcctaccgccaaaccttgctgccgcgaccaggtccttgtccaagccg
cttcatgtgggcgaccttagattagccgatctcaggaaacttatgcaagcctctgggcat
tctgcagagtttcgaggggacggcacactacttatcgatggcttcgtcgttgtgaggaaa
tctggggctggaaaaattgaaatcgaaagctccgcacgtgctgccacagtcaatcccaaa
gcatcgaaaggtgatgaaggaacttttttggcagtgaaacgaaagatttatgactgcctt
gccgttgtcgctcgagggtaa
DBGET
integrated database retrieval system
