Coccidioides immitis: CIMG_02519
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Entry
CIMG_02519 CDS
T01114
Name
(RefSeq) mRNA cleavage factor complex component Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cim
Coccidioides immitis
Pathway
cim03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cim00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CIMG_02519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cim03021
]
CIMG_02519
03019 Messenger RNA biogenesis [BR:
cim03019
]
CIMG_02519
Transcription machinery [BR:
cim03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CIMG_02519
Messenger RNA biogenesis [BR:
cim03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
CIMG_02519
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pfc11_Clp1_ID
Pcf11_C
CID
zf_PCFS4
Zn_ribbon_ISL3
VHS
DUF7340
UBZ_FAAP20
Motif
Other DBs
NCBI-GeneID:
4567463
NCBI-ProteinID:
XP_001248748
UniProt:
J3KLJ1
LinkDB
All DBs
AA seq
662 aa
AA seq
DB search
MSGLASDEVAEDYKNSLEDLTTNDKFQISNLTVIAKENTEHAMAISRVLENHIRTTPPSQ
KLPALYVVDSVVKNVGTPYTLFLGRNLYQTFMNAYTLVDSQTRKKLDEMLKTWKEPVPGS
LDPRPVFPVEITRTIENALIKARTAALQQQQARQQQEIRSRTRGVATPPPAWKQAATLPQ
TAAQYTSSSGQPQHANGQIHSDPYQARYAQTAPPQYPPAAQQQYPYSQSYSEGVDLASLH
RDIDNLILSARSDFANKPLDTAVQQRLKALLDLQSILQQQKLPQEQLKLIRDQVSKLSAS
APVAPIAPAALPLPPITTSAVPTPPLLATHTPQPNLQALLHPSTLAELIKATANPQSRTP
PPPQAQVFSQQAPVSTSSTPTTATPALSENPLIASLRARGLLPPAPGAPASQPAPSLPFI
LPGQNGYTPSTTPQLPTPTQTNIKINVQMSSASIKVPRPNLIFRLYEEKSNRCGTCGRRF
AANDEGKEKKARHLDWHFKTNLRMNEASKRGQSRSWYVDERDWIKSRDYDDDVDLTDAAF
TSAGKSTGQDGATKQAPQQRWIHAPNDAALRNTPCPICQEHFESTWSEEAQDWIWRDATK
VGSRVYHASCYSELTKDGAAAPPGSLTPVGRTSTPDSVLGKRKAEDIDSPGSNVRIKTEP
VS
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgtctggactcgcctcggatgaagtcgctgaggactacaagaactcccttgaagacctg
acgacgaacgacaaattccagattagcaatttaactgtcattgctaaggaaaacactgaa
catgcgatggccatatccagggtcctggaaaaccatatacggacaacccccccttcgcaa
aagctaccggctctttatgtagttgactcggtcgtcaagaacgtagggactccctacact
ttattcttaggacgcaacctctaccagactttcatgaatgcgtatacccttgtcgattcc
cagactcggaaaaaactagacgagatgttaaagacgtggaaggaacctgttccagggtcc
ttggaccccaggcctgtgtttcctgttgaaatcacccgcactatcgagaacgctctgatt
aaagcaaggacagcggcccttcagcaacaacaggcaagacagcagcaggagattcgcagc
cgtacccgtggggttgctactcctcctccggcatggaagcaagctgccaccctaccccaa
actgcagctcaatatacgtcgtcttccggtcagccacagcatgctaacggtcagattcat
tcggatccataccaagcgagatacgcacaaactgctccccctcagtatcctccagctgca
cagcaacaatacccgtacagccagtcgtattcagagggtgttgatctggcttctttgcat
cgcgatatcgacaacttgatcttgagcgcacggagcgactttgctaacaagcctcttgat
accgctgtccaacagcggcttaaggcgcttttagatctacaaagcattctccagcaacaa
aagctaccacaagagcaactaaaacttattcgcgatcaggtctccaaactttcagcatcg
gccccagtagcacccatagccccagctgccttaccccttccgccgattactacatcagct
gtcccaacaccgccgctcctggcgactcatactcctcaaccaaatcttcaggccctatta
cacccaagtactctagcagagcttattaaagccaccgcaaatccccaaagtcgtactcct
ccaccacctcaggctcaagtattttctcaacaagcccctgtcagtacatctagtacaccc
acaaccgcaactccggcgctcagtgaaaaccccttaattgcctcccttagagcacgcggc
cttcttccaccggcgcccggtgctcctgcatcccagccagcccccagtcttccattcatt
cttcctggtcaaaacggatataccccaagcacaactccacaattaccgactcctactcaa
acaaatatcaaaattaatgtgcaaatgagctcggcatctatcaaagtgccccgcccaaat
cttattttccgcctctatgaagaaaaatcaaatcgttgcggaacgtgtgggcgtcgtttt
gcggctaatgatgaagggaaggagaagaaagctcggcatttggactggcatttcaaaacc
aatctacgcatgaacgaagcatccaaacgtggccaaagtcgtagttggtacgtggatgag
agagactggattaaatcccgcgactatgacgatgatgtcgatttaaccgatgccgcattt
acttcggccggtaaatcaacaggccaggatggagcaacgaaacaggccccccagcaacga
tggattcatgcaccaaacgacgcagcgctgcgaaataccccgtgtccaatttgtcaggag
cattttgagtcaacgtggtcggaagaagcgcaggattggatatggagggatgcgactaaa
gtgggtagtcgtgtatatcatgccagttgttattcagagctcacaaaggatggagctgct
gctcctcccggctcactaaccccagttgggcggacatccactcccgattctgttttaggg
aaacgcaaggcagaggacattgactctcctggatctaatgttagaataaaaacggaaccg
gtttcttga
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