Coccidioides immitis: CIMG_04158
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Entry
CIMG_04158 CDS
T01114
Name
(RefSeq) ATP-dependent RNA helicase DOB1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cim
Coccidioides immitis
Pathway
cim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIMG_04158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cim03019
]
CIMG_04158
03041 Spliceosome [BR:
cim03041
]
CIMG_04158
03009 Ribosome biogenesis [BR:
cim03009
]
CIMG_04158
03016 Transfer RNA biogenesis [BR:
cim03016
]
CIMG_04158
Enzymes [BR:
cim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CIMG_04158
Messenger RNA biogenesis [BR:
cim03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CIMG_04158
Spliceosome [BR:
cim03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CIMG_04158
Complex C
U4/U6.U5 tri-SnRNP related factors
CIMG_04158
Ribosome biogenesis [BR:
cim03009
]
Eukaryotic type
Pre-60S particles
Helicases
CIMG_04158
Transfer RNA biogenesis [BR:
cim03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CIMG_04158
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Motif
Other DBs
NCBI-GeneID:
4563036
NCBI-ProteinID:
XP_001244717
UniProt:
J3KCW9
LinkDB
All DBs
AA seq
1074 aa
AA seq
DB search
MQELFDVFEDAPASGATSTHPVIPRAKKDTTKKRQANGEVKQNTPIADVNGAEQPSGDSA
QNESEAFAEFEAEQPEAKRPRVEPEPVVADTFETEQSREIAASAGLQPAQEGAAVVLSHQ
VRHQVALPPNYPYVPISQHKPPETPARTWPFKLDPFQQVSIASIERGESVLVSAHTSAGK
TVVAEYAIAHCLKNNQRVIYTSPIKALSNQKYREFASEFGDVGLMTGDVTINPTATCLVM
TTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIP
NAMQFAEWITKTHSQPCHVVYTDFRPTPLQHYLFPAGGEGIFLVVNEKGNFKEENFQKAM
GAIADKKGDDPADANARGKGKGKNKKTNKGGEKGPSDVFKIVRMIMMKSYNPVIVFSFSK
RECEAHALTLKNLSFNDDSEKEMVTKVFNSAIEMLSDEDKKLPQIENILPLLRRGIGVHH
SGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTNVRKFDGTSQRWLTPSE
FVQMSGRAGRRGLDDRGIVIMMVNEEMDPTVVKEIVRGEQDKLNSAFYLGYNMILNLLRV
EGISPEFMLERCFAQFQSASSVGTLEKELEDLENQRENMTISDEGTIREYYDSRQLLATY
NDEMRITMCRPTYCQRFLDPGRLVHVQHGKIDFGWGLVVNFQQRKPPKNVLEEYPPHESI
IVDVLLDICENASFHMTGDQTLPPGVRPARKGEKSTMAVVPVVLSCIQAFSTVKVTLPKD
LKSAESKKYTKKILTEVQRRFPDGVAVLDPIQDMGIKEEPFKMTMRKVEVVEARLLSNPL
HNSPRLPELYDQYATKVELVNKIKETKRKISDAMSIIQLDELKCRKRVLRRFQFINASDV
VQLKARVACEISSGDELMLSELLFNGFFNTLTPEQCAAVLSVFVFEETAKETPAITNEEL
AKPLREIQAQARTVAKIAQESKLAVNEEEYVQSFRWELMEVIYKWAKGGSFAEICKMTDV
YEGSLIRTFRRLEECMRQMAQAAKVMGSSDLESKFEASLSLVKRDIVAAQSLYL
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagctttttgacgtctttgaagatgctccagcatccggagctacgtcgactcac
cctgtgatacctcgagcaaagaaggatacaaccaagaagagacaggcgaatggagaagtc
aagcagaatacgcccattgcggatgtgaatggagctgagcagccatctggagactcggca
caaaatgagagcgaggcgtttgctgaattcgaggccgaacaacccgaggcgaagcgaccc
agagtcgagcccgagcccgttgtcgccgacaccttcgaaacagagcagtcccgtgaaatt
gcggcctcggctgggttacagccagcccaagagggcgctgctgtcgtcctttcgcatcaa
gtccgacatcaggttgctctgccgccgaattacccctacgtgcctatctcccaacataag
ccgcctgagacaccagccaggacgtggccgttcaagcttgatcccttccagcaagtatcc
atcgcatccatcgaacgaggtgaaagcgttcttgtttccgctcataccagtgccggaaaa
actgtcgtcgctgaatatgctatcgcccactgcctgaagaacaatcagagagtcatatac
acaagtcctatcaaagcgctaagcaatcagaagtaccgagagtttgcatctgaattcggg
gatgtagggttgatgactggcgatgtgacaattaacccaacggcaacttgcctcgtcatg
accacagagattttacgctccatgttatatcgcggatccgagataatgcgagaagtggcg
tgggtagtctttgacgagatccattatatgcgagataaaacccgtggtgttgtttgggaa
gaaacgatcatccttctccctgataaggtccgctacgtattcctttccgctacgattccc
aatgccatgcagttcgccgaatggatcacgaagacccatagccaaccatgccacgttgtg
tataccgattttcgacccactccccttcagcattaccttttccctgcaggtggggaaggc
attttcctggtagtcaacgagaagggaaatttcaaggaggaaaattttcaaaaagctatg
ggcgcaattgcggataaaaaaggagatgaccccgcggacgcaaatgcacgcggaaaaggg
aaggggaaaaataaaaagacgaataaagggggcgaaaagggtccgtccgatgtgtttaag
atcgtgagaatgatcatgatgaaaagctataatccggttattgtgttcagcttcagcaaa
cgtgaatgcgaggcgcacgccttaaccctgaaaaatttaagcttcaacgatgactccgag
aaggaaatggttaccaaggtgttcaatagtgctattgagatgctctcggacgaggacaaa
aagttgccgcagatcgagaatatacttccgctccttcgacgtggaatcggtgtgcatcac
tccggcttgctgccaatcctcaaagaaactatcgagattttgtttcaggaaggcctcatc
aaagtcttgttcgctacggagacgttctccatcggattgaacatgccggcgaagacagtg
gttttcacaaacgtccgaaaatttgatgggaccagtcagcgatggttaacgccttcagag
ttcgtgcaaatgtcgggtcgtgcaggccgtagaggccttgatgaccgcggaattgtcatc
atgatggtcaacgaggagatggacccaactgtggtaaaggaaatagtccgtggtgaacag
gacaaacttaactcggcattctacctgggctataacatgattctcaatttgctaagagtg
gaagggatatctccagagttcatgttggagcgctgttttgcgcagttccagagcgcatcc
agtgttggaacattggagaaagaacttgaggatctggaaaatcagcgggaaaatatgacc
atttctgacgaaggcacgattcgagagtattacgattcacgacaacttttggctacgtat
aacgatgaaatgcgaataacgatgtgcagaccaacttattgtcagcgcttcctcgaccct
gggcggcttgttcatgttcaacatggaaaaatcgattttggctggggcttggttgtcaat
tttcaacagcgcaaacctcccaagaatgtcttggaagaatatccaccacatgaaagcatt
atagtagacgtgcttttagacatttgcgagaatgcatcattccacatgacaggggaccag
acattacctcccggagtccgacctgccaggaaaggcgagaagtctactatggcagtggtc
cccgtcgtcttaagctgcattcaggcattttccacagtgaaagtcacgctacccaaagat
ttaaagtctgccgaatcaaagaaatacacaaaaaagattcttactgaggtccaacggcga
ttcccagatggcgttgcggtgttggatcccattcaagacatgggaatcaaagaggagcca
tttaagatgacaatgaggaaagtcgaagttgtcgaggcacgtttattatcaaatcccctc
cacaactctccgcggctgccggaattgtacgatcaatatgcgacaaaggtggagttagtc
aacaagattaaggaaacgaagcggaagatttcagacgcaatgtcgattattcagcttgat
gaattaaaatgtcgaaagcgcgttctgcgccggttccagttcatcaatgcatccgacgtt
gtgcagctgaaggcccgagttgcttgcgaaattagcagcggtgacgaactgatgctgagc
gagctgctgtttaatggttttttcaacacccttacgcccgagcagtgtgcagcagtgctg
agtgtctttgttttcgaggagacagcaaaggaaactccggctataacgaacgaggagctt
gcaaaaccacttcgcgaaattcaagcacaggcaagaaccgttgcaaaaattgcacaagaa
tcgaaacttgcagtgaatgaagaggagtatgtgcagagcttccggtgggaactgatggaa
gtcatctataagtgggccaaaggtggctcgtttgcagaaatatgcaagatgaccgatgtc
tacgaaggcagcttgattcgaacattccgtaggctagaagagtgtatgagacagatggca
caggctgcaaaggtgatgggcagcagcgacctggagtctaaattcgaagcctcactatcg
ttagtgaaacgtgatattgtcgcggcccagtctttgtatctataa
DBGET
integrated database retrieval system
