Coccidioides immitis: CIMG_04621
Help
Entry
CIMG_04621 CDS
T01114
Name
(RefSeq) pre-mRNA splicing factor ATP-dependent RNA helicase prp16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
cim
Coccidioides immitis
Pathway
cim03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cim00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CIMG_04621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cim03041
]
CIMG_04621
Enzymes [BR:
cim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CIMG_04621
Spliceosome [BR:
cim03041
]
Complex C
Other components
Step II factors
CIMG_04621
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
SLFN-g3_helicase
SRP54
ATPase
Flavi_DEAD
AAA_16
Cas3-like_C_2
NACHT
Motif
Other DBs
NCBI-GeneID:
4562730
NCBI-ProteinID:
XP_001245180
UniProt:
J3KDV7
LinkDB
All DBs
AA seq
1003 aa
AA seq
DB search
MAREDSPKRRKLDPDRYASSSPQPRAPRHVFKRQRRDNNGLSTPRGSHNGSSTPHQHEFD
GPEPLVNYEDAMALDRDWYAGDEFGHTFGDETHNPFGGPDNSWKDMQREAALSEKKNNRR
FNARAVQKQKDVDAWETNRMLTSGVAQRRDYEADFEDDEDSTRVHLLVHDLRPPFLDGRT
IFTKQLEPVPAVRDPQSDMAVFSRKGSKVVRERRQLKERQKQAQDATNVAGTALGNLMGI
KEDEGDSAAAIPGEEDHKGGSKFAQHLKKNEGVSAFSRSKTLREQREFLPAFAVREELLR
VVRDNQVVIVVGQTGSGKTTQLTQFLYEDGYGALGMIGCTQPRRVAAMSVAKRVSEEMEV
KLGGLVGYAIRFEDCTSNETVIKYMTDGVLLRESLVQPDLDKYSCIIMDEAHERALNTDV
LMGLIKKVLARRRDLKLIVTSATMNAERFSKFYGGAPEFFIPGRTFPVDIQYSRSPCEDY
VDSAVKQVLAIHVSQGPGDILVFMTGQEDIEATCDLIHERLALLNDPPKISVLPIYSQMP
ADLQAKIFDKAPPGVRKVIVATNIAETSLTVDGIMYVVDCGFSKLKVYNPRMGMDTLQIT
PISQANASQRAGRAGRTGPGKAYHLYTELAFKNEFYIQTIPEIQRTNLANTVLLLKSLGV
KDLLDFDFMDPPPQDTITTSLFDLWALGAIDNLGDLTPMGRRMSAFPMDPSLAKLLITAS
EEYECSEEMLTIVSMLSVPSVFYRPKERQEESDAAREKFFVPESDHLTLLHVYTQWKANG
YSDGWCVRHFLHPKALRRAKEIREQLSDIMCMQKMTLQSCGTDWDIIRKCICSGYYHQAA
RVKGIGEYINLRTSVTVQLHPTSALYGLGFLPDYVVYHELILTSKEYMSCVTSVDPRWLA
DLGGVFYSIKEKGYSARERRVTEHEFNRRMEIEAQMAADRERAALIASQEAEKEKLKRRQ
EATVGSATVGVRSAVRRPASAAATKTSGSVVRRPPAKRVGRGF
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atggcccgagaagacagcccaaagcggcgcaagcttgatccggaccgatacgcgtcctcc
tctccccagccccgagcaccaaggcacgtcttcaaacgccagagaagggataataacggg
ctatctacgccacgaggaagtcacaatggctcctcaacccctcatcaacacgagtttgat
ggaccggagcctctagtcaattatgaggatgccatggcattggatcgagactggtacgct
ggcgacgaattcggacataccttcggtgacgaaacacacaatccatttggcggaccagat
aactcatggaaagatatgcagcgagaagctgcattgtctgagaagaaaaataatcgccgg
tttaatgcgcgtgcggtgcagaaacagaaagatgtggatgcgtgggaaacgaatcggatg
ttgacgtccggtgtggcgcagaggagagattatgaggcggattttgaagatgatgaagat
tcgactcgggtgcacttgttggttcatgatttaaggccgccttttttagatgggaggacg
atatttacgaagcagttggaacctgtgccggccgtgagggatccacaaagcgacatggct
gtctttagccggaagggcagtaaggttgttcgggaaagaaggcagctcaaagagcgacaa
aagcaggcccaggatgctacgaatgttgctggaactgcgttgggtaatcttatgggtatc
aaggaagatgaaggtgatagtgcagcggctatacccggcgaagaagatcacaaagggggc
agcaaatttgcgcagcacttgaagaagaatgaaggtgttagcgcattcagcaggagcaaa
actcttcgtgaacaacgagagtttctaccggcattcgcagtcagagaagaactattacga
gttgtcagagacaatcaggttgtgatagttgttggccagaccggctctgggaagactact
cagctaacccaattcttgtacgaagatgggtatggggcgctgggcatgatcggctgtaca
caaccccgacgtgttgcggcgatgagtgtagcgaaacgtgtgagtgaagagatggaagtt
aagcttggtggtctcgttggatatgcaatccgttttgaagattgcactagcaacgaaact
gtcataaaatatatgaccgacggcgtgctcctaagagagtctttggtgcagcctgacctt
gataaatattcatgcatcatcatggacgaagcccatgaacgggctctaaacacagatgtt
ttaatgggattaatcaaaaaagttctcgcacgtcggcgggatctgaagctgattgtgaca
tcggccacaatgaatgctgagaggttctcgaaattctacggaggtgcaccggaattcttc
attccaggaagaacctttcctgttgacatccagtattcccggtctccctgcgaagactat
gtcgacagcgctgttaaacaggtccttgctattcacgtttcccaaggtccaggagatatc
cttgtgttcatgaccggtcaggaggatatcgaggctacttgcgaccttatacatgagagg
cttgctcttctaaatgatcctccaaaaatcagtgtcctgccgatctatagtcaaatgcct
gcggatctgcaagccaaaatctttgataaagcgcctcctggagttagaaaggtgattgtt
gctactaatatcgccgaaaccagtctaacagtcgatggtatcatgtacgtggtcgattgt
ggtttctccaaattgaaggtttacaatccacgcatgggtatggacactttacagattacg
ccaatctcccaggcgaatgcatcacagcgcgcaggtcgagctgggcgaacgggtccaggg
aaagcctatcatttatataccgaactggctttcaagaatgaattctatattcaaacaatt
ccagagattcagcgaaccaatcttgctaacaccgttctcctactcaaatcgctgggagtc
aaagatttgctggattttgatttcatggatccgcctccacaggacactatcacaacgtcc
ctattcgacctttgggcattgggtgccattgataaccttggtgatctcacgcccatgggc
cgccgtatgagcgccttccccatggacccatctctagcaaaactgctcatcactgcgtct
gaggagtatgaatgcagcgaagaaatgcttaccatcgtctcgatgctctcggtgccgagt
gtcttctatcgcccgaaagaacgccaagaagaatccgacgctgctcgcgaaaagtttttc
gtgcccgaatctgatcaccttaccctccttcacgtttatacccaatggaaagccaacgga
tattcagacggttggtgtgtgagacacttccttcaccccaaggcgctgcgacgggccaaa
gagattcgagaacaactctccgacatcatgtgcatgcaaaagatgacacttcagagctgt
ggcaccgattgggatattattcgaaaatgtatttgttccggatattatcatcaggccgct
agagtcaaaggaattggcgaatatataaatctacgaacgagtgtcacagtgcaactccac
cctacaagcgctttatacggccttgggttcttacctgattacgttgtatatcatgaattg
atcctgaccagcaaggagtacatgtcctgtgtcacatctgttgatcctcgttggcttgct
gatcttggcggcgtattctactctattaaagagaagggttattctgcccgcgagcgccgt
gtcacagagcatgagtttaaccgtcgcatggaaatagaagctcaaatggcggccgatcga
gaacgagccgccctgatagcaagtcaagaagcagaaaaagaaaagctgaagaggcgtcaa
gaggccactgttggctccgcaacggtgggagtaaggtctgcggttcgaaggcctgcgtcg
gcagcagcaacgaagacgagcgggagcgtggttaggagacctcctgcgaagagggttggg
cgaggattctag
DBGET
integrated database retrieval system
