Coccidioides immitis: CIMG_06827 Help Entry CIMG_06827        CDS       T01114                                  Name (RefSeq) ATP-dependent helicase NAM7   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism cim  Coccidioides immitis Pathway cim03013   Nucleocytoplasmic transport cim03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:cim00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     CIMG_06827    03015 mRNA surveillance pathway     CIMG_06827  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cim03019]     CIMG_06827 Enzymes [BR:cim01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      CIMG_06827     5.6.2.5  RNA 5'-3' helicase      CIMG_06827 Messenger RNA biogenesis [BR:cim03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      CIMG_06827    mRNA cycle factors     Common to processing body (P body) and stress granule      CIMG_06827 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII DEAD NPHP3_N Helicase_RecD SLFN-g3_helicase PIF1 UvrD-helicase nSTAND3 AAA_16 PhoH AAA_22 Ribosomal_S13_N AAA_32 ATPase Motif Other DBs NCBI-GeneID:  4561760 NCBI-ProteinID:  XP_001242931 UniProt:  J3K905 LinkDB All DBs AA seq 1101 aa AA seqDB search MAAEAFTQMGNHMVSDSASTINAVDDMSTVDGDENILKMAGGPRRRQHDDEDEGSEMYDE EDDDDLESLSSIAVDGAIKTSTNKAEEEKELPPHACCYCGIHNTSSVVKCLACNKWFCSA RGNTSSSHIVNHLVRARHKEVQLHPESALGETVLECYNCGTRNVFLLGFIPAKSDTVVVL LCRQPCAAMPSSKDMNWDTSLWQPLIEDRSFLPWLVASPSDQEQLRARHLSPQMIAKLEE MWKENSSATVEDLEKATGVDDEPAPVLLRYDDAYQYQNVFGPLVKIEADYDRKLKEAQSQ DGLIVKWDLGLNNKHLASFVLPKLELGDVKLAVGDEMRLKYSGELRPKWEGVGYVIKIPN NQSDEVTIELRAKGDHKSVPTECTHNFTADYVWKSTSFDRMQSAMKTFAVDELSVSNYIF HRLLGNEVAAGPMKTQLPKKFTAPGLPGLNPSQINAVKAVLQKPLSLIQGPPGTGKTVTS ATVIYHLAKISGGQVLVCAPSNVAVDQLCECIHRTGLKTVRVTAKSREDVESPVRHLSLH EQVRNNDSNVELMKLTQLKNDMGELSSQDEKKFKQLTRAAEKEILSNADVICCTCVGAGD PRLAKFKFRTVLIDESTQSSEPECMIPLVMGCKQVVLVGDHLQLGPVIMNKKAAKAGLNQ SLFERLVILGCAPIRLNVQYRMHPCLSAFPSNMFYEGSLQNGVTSDDRLLKDVDFPWPVA DKPMMFWSNLGNEEISASGTSYLNRTEAANVEKIVTRFFKAGVKPSAIGIITPYEGQRSY VVSSMQLNGTYKKEAYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLNVA LTRAKYGLVILGNPKVLSKHPLWNYLLRHFKEGNCLVEGPLSNLQTSLVQFSRPKQAYRG PQRFQMAYNHASSMAAGLMNGRNGQHTDFQDSGSVASYIPDDVSSVHSSAFGGVAIPPGY PQMFQNFSEVWPQLPNNRRANGSRATGAPSVAEESVAATESDVTGSMIDGRSVGQGGVSL SGLSIHDVTKQPSLSQSDRLKHYVESSGRAEPYRGYENTSVFGGSSASMRIPRGNVSHAT DDDDARSISTAFASQIGGTYD NT seq 3306 nt NT seq  +upstreamnt  +downstreamnt atggcagcggaggcgttcactcaaatgggaaaccatatggtttccgattctgcgtcaaca atcaatgccgttgatgatatgtcaactgtcgatggcgacgaaaatatcttgaagatggcc ggtgggccgcggaggcgacaacatgatgacgaagatgaaggctcggaaatgtatgatgaa gaagatgacgatgacttggagagtctctcaagtattgcagttgatggagctataaagacg tcgaccaacaaagcggaggaagaaaaggaattaccaccacatgcttgttgttactgtggt atacacaatactagcagcgttgtcaaatgtcttgcctgcaacaaatggttctgcagtgcc cgcgggaatacgtcctcttcgcacatcgtgaaccatcttgtcagggccagacataaggag gtccaactccaccctgaatctgcattgggtgaaactgtgcttgaatgttataattgtggt acaagaaatgtgtttctccttggctttattccagcaaagtctgacaccgtggttgttttg ctttgtcgtcaaccatgtgccgcaatgccgtcttccaaagacatgaactgggacacttcc ctttggcaaccccttattgaggatcgctcattccttccctggcttgtagcttctccttca gaccaggagcaactacgagctcgtcacctcagtccgcagatgattgcgaaattggaagaa atgtggaaggagaactctagtgctaccgtcgaagacttggagaaagcgaccggcgtcgat gacgaacctgcgcctgtcttgcttcgatacgacgatgcctaccagtatcaaaacgttttc ggacctctcgtgaagatagaggcagactatgatcgcaagttaaaggaagcgcagtcgcaa gatggactgatagtcaaatgggaccttggtttgaataacaagcatttagcgagcttcgtc ctgcccaaactggagttaggtgatgtgaaactggctgtgggtgatgaaatgcgtcttaaa tattcgggcgaattacgaccaaaatgggagggtgttggatacgttattaagattccgaat aatcagtccgatgaagtcactatcgagcttcgggccaagggtgatcataagtcggtgcct actgagtgcactcacaatttcacagcggactatgtttggaagtcaacctccttcgataga atgcagtccgccatgaagacctttgctgttgatgagctgagtgtttctaactatatcttc catcggcttttgggaaatgaagtcgctgctgggccgatgaaaactcaattgcccaagaag ttcacagcacccggtcttcctggcctgaaccccagtcaaattaacgctgtcaaagctgtc cttcaaaagcccttgagcttgatccagggccctcccggtaccggaaaaactgttacttct gcgacagttatttatcatctagcaaaaattagtggtgggcaggtgctggtttgcgctcca tccaatgttgctgtcgaccaattgtgcgaatgcattcatagaacaggcttgaagaccgtt cgtgtcactgcaaaatcaagagaggatgttgaatcgcctgtccgtcacctttcacttcat gagcaagtccgcaacaatgacagcaatgtcgagttgatgaaactgacgcaattgaaaaat gacatgggagaactatcgagccaagatgagaaaaagttcaaacaactcacacgtgctgcg gaaaaagaaattcttagcaatgcagatgttatctgctgcacctgtgtgggtgctggggat ccaagacttgccaaattcaaattccggaccgttttgatcgacgagtccacacagtcatcg gagcctgaatgtatgatccctcttgtgatgggatgcaaacaagttgttcttgttggggac catctgcagcttggcccggttatcatgaacaagaaggcagctaaggctgggttgaatcaa tcacttttcgagcgcttggtgatcctgggttgtgctcctattcggttgaatgtccaatac cgaatgcacccttgtctgtcagctttcccatctaacatgttttatgaggggtctctgcag aatggcgtgacgagtgatgatcgtcttttaaaagatgtggacttcccctggcctgttgcg gataagcccatgatgttctggtcgaatcttggcaacgaagaaatctctgcttctggaacg tcgtacctgaatcggacggaggccgcgaacgtggagaaaattgttactcgattcttcaaa gccggcgttaaaccgtcagccatcggtattatcactccctatgaaggacagcgcagttat gtcgtcagctccatgcaacttaatggaacatacaagaaagaggcctacaaggagattgaa gtcgcatcagttgacgccttccaaggccgagaaaaggacttcattgtgctgtcctgtgtc aggtccaacgaccatcagggaatcggattcttgagcgacccacgtcgtctaaatgttgcc cttacacgtgccaagtacggtcttgttatcctaggaaaccccaaggttctttcgaagcat cctctctggaactacctcctccgccatttcaaagaggggaattgcctggtggaaggtcct ttgtcgaatcttcagacttcccttgtgcaattcagtcgcccaaagcaggcgtatcgcggc ccacagcggttccaaatggcgtataatcacgcttcaagcatggccgcaggattgatgaac ggtcgaaatggacagcacaccgacttccaggactctgggtctgtcgctagttatattccg gacgatgtttcttcggttcactcttccgcctttggcggtgttgccatcccacctggttac ccgcagatgttccaaaatttcagcgaggtgtggccgcagcttcctaacaatcgtcgtgca aatggatcccgagcgacaggtgcgcccagcgtcgctgaagagtccgtggcggccaccgaa tccgacgtgacgggaagtatgatcgatgggcggagcgtggggcaaggaggggtcagtctc agcggattaagcattcatgatgtgaccaaacagcccagtcttagccagtccgatcgcctg aaacactatgttgaatccagcggccgtgcggagccgtatagaggatacgaaaacacaagc gtgtttggcggaagttcagcgagcatgcggattccccgcggcaacgttagccatgctacc gacgacgatgacgcccgcagcatctctaccgcattcgcgagccagataggaggaacatat gattga

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