Coccidioides immitis: CIMG_06975
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Entry
CIMG_06975 CDS
T01114
Name
(RefSeq) VacB and RNase II family 3'-5' exoribonuclease
KO
K18748
protein SSD1
Organism
cim
Coccidioides immitis
Brite
KEGG Orthology (KO) [BR:
cim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cim03019
]
CIMG_06975
Messenger RNA biogenesis [BR:
cim03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
CIMG_06975
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
Dis3l2_C_term
OB_Dis3
CSD2
Rrp44_CSD1
DUF5774
Motif
Other DBs
NCBI-GeneID:
4561181
NCBI-ProteinID:
XP_001243079
UniProt:
J3K9D1
LinkDB
All DBs
AA seq
1381 aa
AA seq
DB search
MDQQGQSGIPGPTGRRLHIAHRRSPSELTPLMMEQLALQQQIELLQQQQQQIAATHQQYV
NMGYLQPQQPLQHMTNAYSPTGIQGQGGIPNMPSHGNAFQFPQVQQQQLGVPMNNPNQPS
HRRNQSAMPNVGMGPPPAPSSGSAYGEFSQQGQTQSSQSRENGGQGRGRGAPGGGHQRRH
SLALPEARKAAELAQQKRTTSGFQFPIPGSSGASSSGQGERSSTPEEKAGTAATSTTPQA
PQGLGVHRAGNIRAGAHMRSQSLAVGNGRGPPARGVGGFQFPQTGDGPGDGQRRSSHQGH
GRTASRNFDSNWRQQGNQGQAQDQQRGSMGGFNQQQGGGGFQPGHRVRGSVNQSVGSIGS
FQYTGQPQLIQLPQGPVVMAPPQLFGAQHLGPLQLAQLQAMQQGGQLNGQNVSLQPNQQI
SPQLAAQQQQQQRKTLFTPYLPQANLPALLNDGQLVTGILRVNKKNRSDAYVTTPDLDAD
IFICGSKDRNRALEGDLVAVELLDVDEVWSQKREKEEKKKRKDITDTRSGSSAGLDKGRS
DSVTNGDSQIAPDGSIRRRGSLRQRPTQKKNDDVEVEGQSLLLVEEDEISDEHKPLYAGH
VVAVIERVPGQMFSGSLGLLRPSSQATKEKQEAERQARDGGHSRPQQERQQDKPKIVWFK
PTDKRVPLIAIPTEQAPRDFVEKHQDYANNIFVAAIKRWPITSLHPFGTLVEQLGTMGDL
NVETDALLRDNNFASDEFSDAVLKNVGFENWSLESESAASLASRRDFRDERTLTIDPNGS
NALDNAIHVKPLDDDKVEIGFHVADVTHFIKFNSLVDREAKKRGTGVYLMTRIVNMLPPR
LSGEVCSLQPGEDRLTVSVVFRVDPKTGAVEDEPWIGKGIIKSSGKLTYDEIDAAIAGKE
VELQAATLDEVKLLNSIASKFREARFGHRSADVPPLRLFYQLDDENVPVMHNIFDSSTAH
ELMEELSHKTNSLVAKRLFTAFPQKAFLRRQASPNFRRLGTFVDRMSRLGYDMDSTSSGT
LQNSLFKIQDVDLRKGMETLLIKAMRRAKYYVAGTVRDEERQHYTLNLPLYTHFTNPSRR
YADIIVHRQLDAMINNADFPEDIENLSKTADHCNNKKDSAQNAQEQSVHIESCRIIDKKR
QEIGGDLISEGIVLCVYESAFDVLIPEYGFEKRVHCDQLPLKKAEFRKDERVLELYWERG
VPSSAYIPEDERPKPTLSSRAANAAAAARQAEEARQRAREREEAQRKQTETGTMSTDDVD
ALFDDDEDDMSELAEMAAGVSLNSPADRSTQSMPPSPTRNGHVQTPHRTQSDPKIAISAA
EAPEVKLSNKERYINLFKLREEDGEYIQDVTEMTRVPIILKTDLSKSPPCLTIRSVNPYA
L
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atggatcaacaagggcagtctgggatcccaggtcccactggtagacggctgcacatcgcc
catcggagaagcccatcagagcttactcctcttatgatggagcaattagctttacagcaa
cagatagagctgcttcagcagcaacagcagcagatcgctgcaactcaccaacaatacgtt
aacatgggatatctacagccccaacaaccgctgcagcacatgactaacgcctactctcca
accggtattcaaggccaaggtggcatccctaacatgccatctcatggaaatgcgttccag
tttccgcaagtccagcaacaacagctcggcgttcccatgaacaatccaaatcaaccatcg
catcgccgcaaccaatctgctatgcctaatgttggaatgggtcctcccccggctccctcc
tccgggtcagcttacggcgagttcagccagcaaggccaaacccaatcgagtcaaagtcgc
gagaatggcggtcaaggtcgtggtcggggtgcacctggtggtggacaccaacgtcgccac
tctttagctcttccagaagccagaaaagctgccgaactagcacaacagaaacgaactact
tccggcttccaatttccaatacccggctcttcgggcgcctctagttcaggccagggtgaa
agaagttccacgcccgaagaaaaagcgggcaccgctgccacgagcaccacgccgcaagcc
ccacaaggcttgggggtccaccgggctgggaatatccgtgccggtgctcatatgcgcagc
cagtctcttgctgttggtaatggtcgtgggcctcccgccaggggagttggcggattccaa
ttcccccaaactggagatggtcccggagacggacagcgccgctcaagtcatcaaggacat
ggtcgaactgcctctaggaattttgatagcaattggcgtcaacaaggcaaccagggccag
gcgcaagaccagcagagaggctccatggggggtttcaaccaacagcaaggcggaggtggt
tttcagccgggtcaccgagtacggggctctgtaaaccagtccgttggctctataggttcc
ttccaatataccggacagcctcagctcatccagctgcctcaaggaccggtcgtcatggca
ccacctcaacttttcggtgctcagcatctggggcctcttcaattagctcagttgcaggcc
atgcagcagggcggacagctgaacgggcaaaatgtgtcactgcaacctaatcaacaaatc
agccctcagctcgcggcccaacagcagcagcaacagcgaaagaccctgttcaccccatat
cttcctcaagcaaacttgcctgccttgctcaacgacgggcagctagtcactggtatctta
cgggtcaacaagaaaaatcggtccgatgcctatgttactacacctgacctcgatgcggat
atctttatctgtggcagcaaggatagaaacagagctcttgaaggtgatcttgtcgccgta
gaacttctcgatgtggacgaagtctggagtcaaaagcgtgaaaaggaagagaagaaaaag
cgaaaggatatcaccgatactcgaagtggcagctccgccggacttgacaaaggcagatcc
gattcagtcacaaacggagactctcaaatcgctcccgatggaagcattcgtcggcgaggt
agtcttcgacagcgcccaacacaaaagaagaatgatgacgtcgaagttgaaggacaaagt
cttttgcttgtcgaagaggatgagatcagcgatgagcacaagccattgtatgcgggtcac
gtcgttgctgtgatagagcgtgtgcctggccagatgttctccggttcgcttggtcttctt
cgtccaagtagccaggcaacaaaggagaagcaagaagctgaacgtcaagccagagatggt
ggccatagtcgacctcagcaagagcggcaacaggacaaaccaaaaatcgtctggttcaaa
cctaccgataagcgtgtgcctcttatcgctattcccacggagcaagctccgagagacttt
gtggagaagcaccaggactacgcaaataacatcttcgtggctgccatcaagagatggcct
attacttctcttcatccattcggaactctggtcgagcaattaggcaccatgggcgacttg
aacgttgaaacggacgctcttttaagagacaacaactttgcttccgatgaattttccgat
gccgtcttgaagaatgttggatttgaaaattggtctttagaaagtgaaagtgccgcatcg
ctggcctcgcgtcgtgatttccgtgatgagaggaccttgaccattgatcccaacggctcg
aacgcattggacaacgcgatccatgtaaaaccgcttgacgacgataaagtcgaaatcggc
ttccacgttgctgatgtcactcatttcatcaagttcaactctctagtcgacagggaggca
aagaagcgtggtactggggtgtacttgatgactcgcattgtgaacatgcttccacctcgt
ctttcaggcgaagtatgctctttgcagccgggagaagatcgcttgacagtcagcgttgtc
ttccgtgtggaccctaagacgggcgctgtcgaggacgaaccctggattggcaaaggaata
atcaagagctcagggaaattgacgtacgatgagatcgatgcagctattgctggcaaggaa
gttgagcttcaagccgctacccttgatgaagttaagctgctgaacagcatcgcgtcgaag
tttagagaagcccgcttcggtcatcgatcagcagatgtgccgccgctgagactattttat
caacttgacgacgagaacgtgcctgtcatgcataatatttttgactcttctacagctcac
gagcttatggaggaattaagccacaagacaaactccctcgttgctaaacggctatttaca
gctttcccccagaaggctttccttcgccgccaggcatctcccaatttcaggagactggga
acttttgttgatagaatgtccaggctcgggtacgacatggattccacaagtagtggaact
ctgcaaaacagccttttcaaaatccaggatgttgacttgcggaaaggcatggaaacactt
ctgatcaaggctatgcgccgtgcgaagtattacgttgccggaaccgtccgggatgaagag
cgacagcattataccctcaacttgcctctttacactcactttactaacccgtcgcgccgc
tacgcggacattattgtccaccgtcagttagatgcgatgataaataatgctgacttcccg
gaggatattgaaaacctctctaaaaccgccgatcactgtaacaacaagaaggattctgcc
cagaatgcgcaggaacagagcgttcacatcgaatcttgccgcatcattgacaagaaaaga
caggaaatcggaggtgaccttatcagcgagggcattgtactttgtgtttacgaatccgct
tttgatgtgctcatcccagaatatggattcgaaaaacgagtacattgtgaccagctccct
ttgaagaaggctgagttccgcaaggatgaacgcgtgcttgaactatactgggagaggggc
gtaccatcttccgcctacattcctgaagacgaacgaccaaagcctactctaagttcacga
gctgcgaacgctgccgctgctgctcgccaagcagaggaggccagacagcgagccagagaa
agagaggaggcgcaaaggaaacaaactgaaacgggtaccatgtcgaccgatgatgtcgat
gctctcttcgatgacgatgaggatgacatgtccgaattggcagaaatggcagcaggcgta
tcgctcaactcgccagctgaccgctccacacagagtatgccaccatccccaacgagaaac
ggccatgttcaaacgccacatcggacccaatccgatccgaaaatagcgattagcgccgcc
gaggctccagaggtcaaactttccaacaaggagagatatatcaacctctttaaacttcgc
gaggaagatggcgagtatatccaggatgttacagaaatgaccagagtgccaattattcta
aaaactgaccttagcaagagtccaccgtgccttactattaggtcggtgaacccatatgcg
ctttga
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