Coccidioides immitis: CIMG_07093
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Entry
CIMG_07093 CDS
T01114
Name
(RefSeq) VacB and RNase II family 3'-5' exoribonuclease
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
cim
Coccidioides immitis
Pathway
cim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIMG_07093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cim03019
]
CIMG_07093
Messenger RNA biogenesis [BR:
cim03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
CIMG_07093
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
Rrp44_CSD1
Rrp44_S1
OB_Dis3
PIN_4
CSD2
OB_HELZ2
Motif
Other DBs
NCBI-GeneID:
4561169
NCBI-ProteinID:
XP_001243197
UniProt:
J3K9L8
LinkDB
All DBs
AA seq
1044 aa
AA seq
DB search
MKSLRRDRSSHPHAANVSSKIFVRTTKSGKVQKIVRELYLRQDIPCSSKLCPSCLSYAPT
DANGNVTPFVLSERPAGTKAFPRGHYLMPDTNALLNGMDLFEQTSAFYDVIVLQTVLEEL
KNQSLPLYNRLISLIRSEEKRYYLFFNEFRLETHVRRQRDESINDRNDRAVRRAANWYSE
HLSEVLKQSRKNYTVPAIVVITDDKDNILKAKKEGVSALSLSDYVAGLDDADRLLDMVNE
SRSAHDAKLQRGQLIYPEYYSMSKLMTGLRAGTLHQGIFNVSPYNYLEGSVQVAAFDKSL
LILGRENSNRAIAGDLVVVEVLPKDQWKSPSTKIVDEEALTKDENPESEENEAVVTERER
RALQEEVRKAHGTNPEGRPQPTARVVGVIKRNWRQYVGNIDGGSFSSEASSGRRQQAVFV
IPMDKRVPKIKIRTRQASELLGQRILITIDAWDRDSRYPTGHFVRSLGELETKGAETEAL
LLEYDVQYRPFSQTVLNCLPPEGHSWKVPGNLDDPLWKDRKDLRDLLVCSIDPPGCQDID
DTLHSRPLPNGNFEVGVHIADVSHFVQPNNAMDIEASMRGTTVYLVDKRIDMLPMLLGTD
LCSLKPYVERFAFSVIWEMTPDAEIVSANFTKSVILSKEAFSYEQAQLRIDDESKKDELT
QSMRTLLRMSKILRQKRMDAGALNLASPEVRIETESELNDPVADVKTKALLATNSLVEEF
MLLANITVASRIYQSFPQTALLRRHATPPPQNFEQLIAQLSKKRGLTLDVSSSLALANSL
DKCVDPSNPFFNTLIRILATRCMTSAEYFCAGAHAESEFRHYGLASSIYTHFTSPIRRYA
DLVVHRQLAAAIGYEGPGASVGEGLATRSKLEDICKNINHRHRNAQFAGRASIEYYVGQA
LKARGEMEAAKSGNENGAAAGVDEEGYVMRVFDNGIVVFVPRFGIEGVVRLEDFLLPGQK
VDEIGVRGGKHIAARRESEFDPEEYALRVREKQHEGEDGGEKVKAGSVYVELFEKVKVNV
SSVKEEGVRGAGKRRVRILVLGKA
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagtttacggagggaccgctcctcccacccacacgctgcgaatgtttccagcaaa
atctttgtgaggacaactaagagcggaaaggttcagaagattgtacgagaactatatctg
agacaagacattccgtgctcatcaaaattatgcccgtcatgcctctcatatgcgccaacg
gatgccaatggcaacgtcacgccgtttgtcttatctgagcgaccagccgggacgaaagca
tttccgagagggcattacctgatgccagataccaatgcgcttctcaatggaatggatctt
ttcgagcagacaagcgcgttctacgatgtgatcgtcttacagacagttctagaagagctt
aagaaccagtccctccctttatataatcggttaatctccttaattcggagcgaggagaag
cggtactacctctttttcaacgaattccgcttggaaacacatgttcgccgccagcgagac
gagagtataaacgatcgcaatgacagggctgtgcgtcgggcagcaaactggtactctgag
catttaagcgaggttttgaagcaaagcaggaaaaattatacggtaccggcaatcgttgtt
attacagacgataaggacaatatcttgaaggcgaagaaagagggcgtttctgcgttgtcg
ttgtcagattatgtcgcaggccttgacgatgcagacagactcctggacatggttaatgag
tcgagatctgcacatgacgccaaacttcagagagggcaattgatttatccggagtactat
tccatgtcaaagttgatgacgggtttacgtgcaggaactttacaccaaggcatattcaac
gtttctccttacaactacctcgaaggatcagttcaggtggcggcgttcgacaagtctctg
cttattcttggtcgagagaatagtaatcgagcaatcgccggagatttagtggtcgttgag
gtattgccaaaggatcagtggaagtctccttccacgaagatcgtggatgaagaagcgctc
acgaaagacgaaaaccccgagtctgaagaaaatgaagccgtggtgacagaaagagagcga
agagcacttcaagaggaagtcagaaaagcccacggaacaaaccctgaagggcgaccgcag
cccacagcccgtgtagttggcgtgatcaagaggaactggcgtcaatatgtgggtaatatt
gatggcgggtcatttagttctgaagcttcgtccggtcgcaggcaacaagcagtatttgtc
attcccatggataaacgtgtcccgaaaattaaaatacgcacccgacaggccagtgaacta
ctgggtcagcgtatattgataacaattgatgcctgggatcgcgactcgcgctatccaact
ggccacttcgtccgttccttgggtgaactggagacaaagggagcggaaaccgaggccctc
ctacttgagtacgacgtgcaatataggccgttctcgcaaacagtcctcaattgtcttccg
cccgaagggcacagctggaaagttcctgggaacttggatgacccattatggaaagatcgg
aaggacttgagagatttgctagtttgcagtattgaccctccaggatgtcaggatattgac
gatactctacattcaagaccattgccaaatggaaatttcgaggttggtgttcatatcgcg
gatgtatcccactttgttcagcccaacaacgccatggacattgaagccagcatgagagga
actaccgtgtatctggttgataagcgtattgacatgttaccaatgcttctcggcaccgac
ctctgctccttaaaaccgtatgttgagcgctttgcgttctcggtaatctgggagatgacg
cctgatgcggagatagtatcagccaattttaccaagtccgtgattctttctaaggaagct
tttagctacgaacaagcgcagttgcgaattgatgatgagtctaagaaagatgagctgacc
caaagcatgcgcacattgctgcgcatgtccaagatcctacgacaaaaacgcatggacgct
ggagctcttaaccttgcttcccctgaagtccgtatcgaaactgaatcggaactcaatgat
ccagtagccgacgtgaaaaccaaagctcttctcgctaccaacagccttgttgaagaattc
atgttgctcgccaacatcaccgtcgcctcccgcatatatcaatcatttccacaaaccgcc
cttcttcgtcgtcatgccacacctcccccccaaaacttcgaacagctaatcgctcaactc
tctaaaaagcgcggcctcaccctcgatgtatctagctccctagccctcgcaaactccctc
gacaaatgcgtcgacccatccaacccatttttcaacaccctaatccgtatcctcgcaacc
cgctgcatgacttcagccgaatacttctgcgccggggcccatgcagaatcagagttccgc
cactacggtctcgcctcgtcgatctacacgcatttcacctccccaattcgtcgatacgct
gacttggtggtccatcgccaactcgcagccgccatcgggtacgaaggacccggcgcgtct
gtgggcgaaggcctcgcaacgcgcagtaaactagaagatatttgcaagaacatcaaccac
cgacatcgcaatgcgcagttcgctggccgcgcaagcatagagtactacgtcggccaggcg
ctcaaagcacgcggcgagatggaagctgcgaaatccggcaatgagaacggcgctgctgcg
ggcgttgatgaagagggctacgtgatgcgcgtgtttgataatgggattgtggtctttgtg
ccgaggttcggaattgagggcgtggttaggctggaggatttcttgctccctggacagaag
gttgatgagattggggttcgtggggggaagcatattgccgcgaggagagagagcgagttt
gatcccgaggaatatgcgctgagggtgcgagagaagcagcatgagggagaagatgggggt
gagaaggtgaaggcgggaagtgtctacgttgagttgtttgaaaaggtcaaggtgaatgtg
agttccgtgaaggaagaaggggttcgcggggcgggtaagcggagagtacggattttggtc
ttgggaaaggcgtaa
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integrated database retrieval system
