Coccidioides immitis: CIMG_08539
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Entry
CIMG_08539 CDS
T01114
Name
(RefSeq) hypothetical protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cim
Coccidioides immitis
Pathway
cim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIMG_08539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cim03019
]
CIMG_08539
03012 Translation factors [BR:
cim03012
]
CIMG_08539
Enzymes [BR:
cim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CIMG_08539
Messenger RNA biogenesis [BR:
cim03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
CIMG_08539
Translation factors [BR:
cim03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
CIMG_08539
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MADF_DNA_bdg
HA2_N
OB_NTP_bind
AAA_29
Motif
Other DBs
NCBI-GeneID:
4560481
NCBI-ProteinID:
XP_001241376
UniProt:
J3K5Q2
LinkDB
All DBs
AA seq
1414 aa
AA seq
DB search
MLKLGEMQTAVRRLHRCPRRCPTPWRSMRSPDSIPATRSLAVSSARRSLRSGLIPVSKGH
WSSKHLLNRKYSAVSKGIFNDDVTADMLREFHQAHDQRLKWAEASNGVETPIGFANVDDY
PALKGIEANPVRIRELLESAVSAEFQMEFRALGPVDVMCLVTCSIPLLRTVIKVSGKGDS
EANAKHVAFTYLVSELHNRRLLKAIFDHKASLADLKGIYDYAARFLCVPIFQFRMVRDSL
QSDGYNFEVTISLEEQSLSVTTTANSFDEAVKRAIHDFNKKRAIFSVINSTKQTCSDSIA
AWEVEGFIDFYEFSKSLRNCVRVKVDKQPISPEKSAYIASVYVRNELIPEPVIAFEDRQV
RKIANLAAAITLIRQDPSLWDVYYRKYARRRKKLSMNRSVVEEMKFLSKNLNYSRRKMVD
RVQNIEPSNLKGELRFGNVLHSDLEQRSHHLRNHLSWLEEQQSPHPRTLSRRLPVYRYKT
DIIQMVDQNDYSFITGAFGSGKSTQVPQILFDHAIMQGAGALCNIFVSKDRLSTVKGNAG
RVALERSQTLGSTVGYGDSFGPKLPTLAGSISYYTHEMLLDLLSDESNGIFETASHVIID
DVEKRTISTDLLLAYVKSKVSERVNQGKPVPKLIVMGLDFDVELFASYFQVQPSREDFAC
PSVRIQSNDHPADKVYLNSILEQLGSVRGYHSLLSEPQTARYLSLENIEVARPLPYEEGL
RMCEENSPINGEQDIIPGSLWEEGLWLNDDNSHISGEQESIPESWWEEVLQTSKENLSIN
EGQEIMRDSWWEDGLQLSEDNSPVNGEQDIVPHLQEEVPPTPIGLVAAAVDHIAQTTETG
AILALLPDQDDIERVNQLLVRMIENDTSNRGKYRIFKHSPDKSGGSSADDRTSRTIILST
GTAGFPLAERVRFVVDAGFMTEKLHHPWSSTTSQVRRWIYKSWLQDRVMLASHKENGKYY
ALFSKEREASLQPHSTPHIRRLEFDRACLHAKVLFPSRGSISDILSGLIEPPSREHIFEM
TRKLQALNLIDQWDRLTPLGRIVSSLPLSPIAGKLVVLGVIFRCLEPLLISAAAVDLTSD
KASIFDRRRAHTESAQGPFFQFIRDSVSDHIGVINAFKYTNEQWNKHGESKAQLACRSKF
IRYPMFLKIWESVLRVEEMLFDAGIIPNPSRSNVIGGHALNMNSTSQSLIKSLLLRALLP
NIAEREQRGIWNTATTSEIQALPGTALRNISLRVNGVAIFSSLLTSGRSGNVYLDTATLI
PSMMACLFAENLKQNENMLYLYPWLQYSLPEDHPFDIRQSSSRVFSTCKSFLDEFINLAV
KDLAAYKLRRAVCFYRGGLKGESRDVSAKRRRLLYRFPYMNDRVSKTFVSALHKVFDGSM
GPVRGDTRVAPRWPSGDISKDPATNSETDCCIDS
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgctaaaactgggcgagatgcaaacggctgtgcgccgcctgcatcgttgtcctcgaaga
tgtccgaccccatggcgttcgatgcgttctccagactctattcccgccacacgttccctc
gcagtgagttcggccagacgcagcttgcggtcgggactcattccggtttcaaagggacat
tggagctccaaacatttgttgaaccggaaatatagtgctgtatcgaaaggtatatttaat
gatgatgtcaccgcggacatgcttcgcgaattccaccaggcgcatgatcaacgcttgaaa
tgggcagaggcctccaacggagtggaaacccccattggattcgcaaatgtcgacgattat
cctgccctaaagggtatcgaagctaacccagttcgcattcgtgaactactggaatcggct
gtcagcgcggagttccaaatggaatttcgggcgcttgggcctgttgatgttatgtgcttg
gttacgtgttccataccgcttcttcgcacagtgatcaaagtttccggaaaaggggactca
gaggcgaatgcaaaacatgtcgcatttacatatttagtctcagaactccacaatcgtcgt
cttctgaaagccatattcgatcataaggccagcctagctgacttgaaaggaatatacgat
tatgctgcccgtttcctatgcgttcctatatttcaatttaggatggtgcgtgactctttg
caaagcgacggctacaactttgaagttacgatttcgctcgaggaacaatctttaagtgtt
accaccaccgccaactcgtttgatgaagcagtaaaacgggcaatccatgatttcaacaag
aaaagggcaattttctctgtgataaacagcacgaagcaaacttgcagtgattcgattgct
gcgtgggaagttgagggctttattgacttctacgaattctccaaaagcttacggaactgc
gttcgtgtcaaagtggataagcaacccattagtcctgagaaatctgcgtacattgcctca
gtatatgttcgaaatgagcttatccctgagcctgttattgcttttgaggacagacaggtc
cgtaaaattgcaaatttagccgcggcgattacacttatccggcaagatccgagtctttgg
gatgtgtattaccgaaaatacgcaagaagacgaaagaagctttcaatgaatcggagtgtt
gtcgaggaaatgaagtttctgtcgaagaatctgaattattcccggcgcaagatggttgac
agggtacaaaatatcgaaccaagtaatctgaaaggagaactccgctttggcaacgttctt
cattccgatctcgagcagaggtcacaccaccttaggaatcacctttcttggctggaggaa
caacaaagccctcatccccgtactctgtcgcggaggctacctgtttatcgctacaaaaca
gatatcattcagatggtagaccaaaatgactatagctttatcacgggcgcctttggaagc
ggaaagtctactcaggttccgcagatcctttttgatcacgctataatgcagggagcagga
gctttgtgtaatatctttgtctctaaggatagactatccactgtgaaaggaaatgctggg
cgagttgccttggagcgttctcaaacactgggcagcacagtcggatacggtgactcattt
ggccctaagctcccaacgctagctggcagcatctcatactacacgcatgaaatgcttttg
gatctgctaagcgatgaatcgaatggaatttttgagaccgcttctcatgtgatcatagat
gatgttgagaagcgaactatctcaaccgatcttctactagcgtacgtgaagtcgaaagtc
tcggagagagtaaatcaaggaaagccagttcctaaattgatcgttatgggcttggatttt
gacgttgagttattcgcgagttattttcaggtccaaccatctagggaggactttgcttgt
ccgtctgtccgtattcaaagcaatgatcatccggctgataaggtttacttgaatagcata
ctggagcagttgggttcggttcgtggctatcattctttattatctgagcctcagaccgct
cgatatctgtcccttgagaatattgaagttgcgcggccattaccatatgaagagggcctt
cggatgtgtgaagagaactcacctattaatggagaacaagatattatacctggctctttg
tgggaagagggtctctggctaaatgatgacaattcgcatatcagtggagaacaggagagt
ataccagagtcttggtgggaagaggttcttcagacgagcaaggaaaacctgtctatcaat
gaaggacaagagatcatgcgtgactcttggtgggaagatggtctccaactaagtgaggac
aattctcctgtcaatggagagcaagatattgtacctcaccttcaggaagaggttccccca
acccctattggattggtggcagctgctgttgaccacatcgcccaaactacagaaacgggt
gcaattctagcccttcttccggaccaagatgatattgaacgtgtgaatcagttgctggtc
aggatgatagagaacgatacgagcaataggggtaaataccgaatattcaagcattctccc
gacaaaagtggtggatcctccgcagatgatcggaccagtcgaacgatcattctttcaact
ggcacggctggttttccccttgccgaacgtgtccgttttgtagtggatgccggtttcatg
acggaaaaactgcatcatccgtggagttcaaccacgtcacaggtccgccgctggatctat
aaatcttggctacaagaccgagtgatgcttgcaagccacaaagaaaatgggaaatactat
gccctgttcagcaaggagagagaagcatcgttacagccgcattcaacccctcatatccgt
cgcctcgagtttgatcgggcgtgtctacatgcaaaagtcctcttcccttcgagaggatct
atatctgatattctatcgggattaatagagccaccatcgcgagagcacatctttgaaatg
actcgtaaacttcaggcattgaatctcattgaccaatgggacaggttgactccattaggg
cgaattgtttcatcgcttccactatcgcccatagcgggcaaactagttgttctaggtgtc
atatttcgctgtcttgagcccttactcatatctgctgctgctgtggatttgacctccgat
aaggcgtctattttcgaccgccgacgtgcccacactgaatcggcccaaggtccatttttt
caattcatcagggatagcgtcagtgaccacattggcgtcatcaatgcattcaagtacacc
aatgagcaatggaataagcatggcgaatccaaggctcaacttgcctgcagatccaaattc
attagataccccatgtttttgaagatatgggagtccgtcctccgggtggaagagatgctt
ttcgatgcgggaattatccccaacccttctcgaagcaacgtgattggcggacacgcattg
aatatgaattccacttcgcagtctctcataaaaagccttctactgcgtgcgttgcttcca
aacatcgcagagagggagcaaaggggtatatggaacacagcaacaacaagtgaaatacaa
gccctgccaggaacggctcttcggaatataagcctgagggtcaacggcgtcgccatattc
tcatcgctcctaacgtcgggccggtctggaaatgtatatcttgacactgcaacgttgatt
ccatcaatgatggcctgtttgtttgcggaaaacctgaaacagaatgagaatatgttgtac
ttatacccatggctgcaatatagcttgcccgaagatcatccgttcgacatcaggcagagt
tctagtcgagtattttcgacgtgtaaatcattcttggacgaatttatcaacttggctgtg
aaggaccttgcggcttacaagctacggagagccgtctgcttctatcggggtgggttgaaa
ggtgaatcacgagacgtgtccgcgaaaaggcgcagactcctgtaccggtttccttatatg
aatgatagggtgtccaagacttttgtcagcgcccttcataaggtattcgacggaagcatg
ggcccggtgagaggagacacacgggtggcgccgcgttggccatcgggtgatatctcgaaa
gatcctgctacgaattcggaaaccgactgctgcatagattcttga
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integrated database retrieval system
