Coccidioides immitis: CIMG_09200
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Entry
CIMG_09200 CDS
T01114
Name
(RefSeq) pre-mRNA-splicing factor syf1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cim
Coccidioides immitis
Pathway
cim03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cim00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CIMG_09200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cim03019
]
CIMG_09200
03041 Spliceosome [BR:
cim03041
]
CIMG_09200
Messenger RNA biogenesis [BR:
cim03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
CIMG_09200
Spliceosome [BR:
cim03041
]
Complex B
Other components
Prp19-related factors
CIMG_09200
Complex C
CIMG_09200
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
Mad3_BUB1_I
ARM_TT21
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
4558505
NCBI-ProteinID:
XP_001239579
UniProt:
A0A0E1RUM2
LinkDB
All DBs
AA seq
852 aa
AA seq
DB search
MPGTVLNARASQQRAEVDKMDSARSDLYLISSEDAVYEQDILRDPASIKPWLSYIEFKQQ
NGTAYEQAFVMERACKHLPRSYKLWKMYLEFRIKHLRGRNPAVHRIEYLKVNALFERAVI
LLNKMPRIWEMYLAFLLEQPLVTQTRRTFDRALRALPITQHNRIWKLYKSFAVSASGDTA
VKIWDRYMQIHPENAEEYIDILVEMKQYTDAVRRYIEVLDDPRFQSKKGKSHFELWTEMV
ELLVNHAKEIETGPQSGIDVAAIIHSGIDRFPDQRGKLWVGLATYWITRGNFEKARDVFE
EGVTTVMTVRDFTMIFDSYVEFEESIISALMETAAVRLDEGKADENADFDLDLRMMRFEQ
LMDRRPFLVNDVLLRQNPNNVVEWNKRVALWGDNKEEVVRTYGAAIAAINPKKAHGKFHE
LWVNFAKFYEKGGDLATARIIFDKAVKVPFKSVEELAEIWCEWAEMELRNENFDQAVNIM
AKATLSSKRSTVDYFDDKLTPQQRIHKSWKVWSFYVDLVESVGNLDETKNVYERIFELRI
ATPQTVVNYANLLEENKYFEESFKIYERGLDLFSYPVAFELWNLYLTKAVDRKISIERLR
DLFEQAVDGCPPKYAKTLYLMYGNLEEERGLARHAMRIYERATRAVSDKDRFEMFNFYIT
KSASNFGLTSTRPIYERAIAALPDNEAKEMCLKFAEMERRLGEIDRARAIYGHASQFCDP
RTNAGFWQKWEAFEVQHGNEDTFKEMLRIKRSVQVQYNTDVNFIASQAIARSKQLAKEAA
DVAAAEEPEERADAMAALERHAKAPAGFVPASTGPEGGNRPVTERDQAPATNPDAIDLDE
DMAAEEPQEASS
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgccggggaccgttttgaacgccagagcttcgcagcagcgcgcagaagtcgacaagatg
gattcagctcggtctgatctctatttgatttccagcgaggatgcggtgtatgagcaggat
attctgcgcgatccggccagcattaaaccctggctttcatatatcgagttcaagcagcag
aatggaacagcgtacgaacaggcgtttgtcatggagcgggcttgcaagcatctcccgagg
tcatacaagctgtggaaaatgtatctcgagttccgaatcaaacatctccgagggcgaaac
ccggcggttcatcgaatagagtatctcaaggtcaatgctctctttgaacgggccgtcatt
cttctcaataaaatgccacggatttgggaaatgtacctcgcattcttgctagagcagccg
ttggttacgcaaactcggcgaacgtttgaccgtgcccttcgcgctttaccaatcacccag
cataatcgaatatggaaactgtacaagtccttcgcggtctctgcttccggtgacacggcc
gtcaaaatatgggatcgttacatgcaaatacaccccgagaatgccgaggaatacatcgat
atcttggtggagatgaaacaatatactgatgccgtgagacgatatattgaggtcctagac
gatccaagatttcagtccaaaaagggcaaaagccatttcgaactctggacagaaatggta
gagctacttgtcaatcacgccaaggagatcgaaacaggcccgcagtcgggaattgacgtg
gcggcaatcattcacagcggcattgacagatttcccgaccagagaggtaaactctgggtt
ggtctagcgacatactggatcactcgcggcaatttcgaaaaagcccgggatgttttcgaa
gagggtgtcacaaccgttatgacggtccgtgactttacaatgatatttgattcctacgtt
gagtttgaagaatctatcattagtgccttgatggaaacagccgctgttcgtttggatgaa
gggaaggccgatgagaatgctgacttcgaccttgaccttcgtatgatgagattcgagcaa
ctgatggatcgccgaccctttttggttaacgatgtccttttgagacaaaaccccaacaac
gtcgtagagtggaacaaacgagtggctttgtggggcgataataaagaagaagttgtccgc
acttatggggctgctattgctgcaatcaaccccaagaaggctcacgggaaattccacgaa
ctctgggttaatttcgctaagttttacgagaaaggtggagatctcgctaccgcaaggata
attttcgacaaagcagtcaaggtgcctttcaagtccgtcgaagagttagctgagatctgg
tgcgagtgggcagaaatggagctgcggaacgagaatttcgatcaagctgtgaacattatg
gccaaagctactctctcatctaagcgttctaccgtcgactactttgacgataagctgact
cctcaacaacgcatacataagagctggaaggtatggagtttctatgttgatttggtggag
agtgttgggaaccttgatgaaacgaagaatgtatatgaaaggatcttcgagcttcggatt
gcaactccccagacagtcgtcaattatgccaatctgctggaggagaataagtattttgaa
gaatccttcaagatctatgagcgaggtcttgatctctttagctatccagttgctttcgag
ctgtggaacctctatttgaccaaagccgttgaccggaaaatcagcattgaacgattacgg
gatctgtttgaacaagccgtggatggatgcccacctaagtacgctaagactctttactta
atgtacggcaatcttgaggaagagcggggcctcgcacgtcatgcaatgcggatctacgag
cgcgcgactcgcgcagtatcggataaggacagatttgaaatgttcaacttctacatcacc
aaatcagcatccaattttggcttaacgtcgactaggcctatttatgaacgcgccattgcc
gcgttacccgataatgaagcgaaggaaatgtgtctgaaatttgcagaaatggagcgcagg
ctgggtgagatcgatcgagctcgcgcaatatatgggcatgcctctcaattttgtgatcct
cggaccaacgccggtttctggcaaaaatgggaggcatttgaagttcagcacggtaacgaa
gacacattcaaagaaatgctacgtattaaacgaagtgtccaagttcagtacaatacggat
gtcaacttcattgcatcccaggcgatcgccaggagcaagcaacttgcaaaagaagcagcc
gacgtcgcagccgctgaagaacccgaggagcgtgcggacgccatggcagctttagagcgc
cacgccaaagctccagccggctttgttcccgcaagcactggccctgaaggaggtaaccgc
ccagttacagaaagagatcaagcaccagcaaccaatcccgatgctattgatctcgacgaa
gatatggctgcggaggaacctcaagaagccagttcatga
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