Coccidioides immitis: CIMG_09352
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Entry
CIMG_09352 CDS
T01114
Name
(RefSeq) exosome complex subunit Csl4
KO
K07573
exosome complex component CSL4
Organism
cim
Coccidioides immitis
Pathway
cim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIMG_09352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cim03019
]
CIMG_09352
Messenger RNA biogenesis [BR:
cim03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CIMG_09352
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
CIMG_09352
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
S1_RRP5
Motif
Other DBs
NCBI-GeneID:
4559096
NCBI-ProteinID:
XP_001239731
UniProt:
J3K258
LinkDB
All DBs
AA seq
341 aa
AA seq
DB search
MGAVPLPSIAIPGQRLADSSSYISGPGTYIRDNSIYASIPGPIVIQEPVATDPKSKKTRV
VTVSRSSTPSTSTIKSPSQPQGLALLGSSNRRIPLKFNTLPTVGSIVLGRVTRVQRRQAT
ISILLVLPENQQLNPSADDSEDPSDADLPSILASASISTTSDSLNADELRPQALIRKEDV
RAVEKDRVVMEESFRVGDIVRAVIVSVGDQVAYYASTAGNELGVVMARSSTVESGVGMEG
FGGNMMFPVSWKEMRDPVTGRGEMRKEFGGVGARIDDVWDTSRWRFLAEREYRSGILATR
TASAKSEVSHTPVDARNMPFKGIITILPWHRGLANESKKAD
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgggagctgttccgctcccctcaatcgccatcccaggccaacggctggcagattcttcc
tcctacatctctggacctggcacttacatccgcgacaactccatctacgcctccattccc
ggtcccatcgtcatacaagagcccgtcgccacagacccaaagagtaagaaaaccagagtc
gtcaccgtgtcgcgctcatccacaccctccacatccaccatcaaaagccctagtcaacca
caaggcctcgccctcctcggctcctcgaacagacgcatcccactaaaattcaacaccctc
cccacggtcggcagcatcgtcctgggccgcgtaacgcgcgtccaaagacgccaggcgacg
atatcaatcctactcgtcctccctgaaaaccaacagctcaaccccagcgcggatgattca
gaagacccctccgatgccgatctacccagcattcttgccagtgcgagcatatctactact
tccgactcgctgaatgcagatgagctacgtccccaggcgctgattcgcaaggaggatgtg
cgtgcagtggagaaggatcgtgtggtgatggaggaatcttttcgtgtgggggatattgtg
cgcgcggtgattgtgagtgtgggtgatcaggtggcttattacgctagcacggcggggaat
gagttgggggtggtgatggcgaggagtagcactgtggagagtggtgttggaatggagggc
tttggtgggaatatgatgttcccggttagttggaaggagatgagggatccggtcactggg
aggggagaaatgaggaaggaatttggaggggttggtgctaggattgatgatgtttgggat
acctcgagatggcgtttcctcgcggaaagggagtatcgatcggggattctggctacaagg
actgcatccgcgaaaagtgaagtatctcacacccctgtggatgctcgaaatatgcccttc
aaagggataatcaccatcttaccgtggcacagggggctggctaatgaaagcaagaaagcg
gactga
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