Coccidioides immitis: CIMG_10056
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Entry
CIMG_10056 CDS
T01114
Name
(RefSeq) ATP-dependent RNA helicase SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cim
Coccidioides immitis
Pathway
cim03013
Nucleocytoplasmic transport
cim03015
mRNA surveillance pathway
cim03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cim00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CIMG_10056
09122 Translation
03013 Nucleocytoplasmic transport
CIMG_10056
03015 mRNA surveillance pathway
CIMG_10056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cim03019
]
CIMG_10056
03041 Spliceosome [BR:
cim03041
]
CIMG_10056
Enzymes [BR:
cim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CIMG_10056
Messenger RNA biogenesis [BR:
cim03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CIMG_10056
Spliceosome [BR:
cim03041
]
Complex C
Other components
EJC/TREX
CIMG_10056
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CIMG_10056
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Ned1_M
Motif
Other DBs
NCBI-GeneID:
4557925
NCBI-ProteinID:
XP_001239034
UniProt:
Q1DI07
LinkDB
All DBs
AA seq
443 aa
AA seq
DB search
MSHEEDLIDYSDEELQTTDAAAAAATAAAAANGAAVKKGDLTVSGARADKKGSYVGVHST
GFRDFLLKPELLRAITDCGFEHPSEVQQVCIPTAILKVDVLCQAKSGLGKTAVFVLTTLN
QLEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIEVLSSKD
TYPNIVVGTPGRLNALVREKKLSLRNIKAFVLDECDKMLDQIDMRRDVQEIFRSTPADKQ
VMMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAEKNRKLNELLD
NLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVA
TDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGLSISFVSSEDDMKTLKDI
EKRFEVALPEYPEEGVDASTYMA
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacgaggaagatctgatcgactactccgacgaggagctccagacaaccgatgcc
gctgctgctgccgccaccgccgccgcggctgcaaatggcgccgctgtgaaaaaaggtgac
ttgaccgtgtctggcgcgcgtgcggacaagaagggtagctatgttggcgtccactcgact
ggtttccgcgacttcctgctgaagccggagcttctgcgtgcgatcaccgattgcggtttc
gaacatccttcggaggtccagcaagtttgcatcccgaccgccatcctcaaagtcgatgtt
ttgtgccaggcaaagtccggtctgggaaagacagcagtcttcgttttgaccaccttgaac
cagcttgagcctgttcctggcgagtgctcgatcctcgtcatgtgccatacacgagagctt
gcctaccagatcaagaatgagtatgctagattcagcaagtatctccccgatgtcaagacc
gctgtcttttacggtggaaccccaatgcaaaaggatatcgaagttctctcctccaaggac
acctaccccaacatcgttgtgggtacacctggtcgactgaacgccttggtccgcgaaaag
aagctttcccttcgaaacatcaaagccttcgtcctagatgagtgcgataagatgctagac
cagatagacatgcgacgtgatgtccaggaaattttccgctccactcctgctgacaagcaa
gtcatgatgtttagcgccaccctttcccaggagattcggcccatctgcaagaagttcatg
cggaaccctctggaggtttacgtggacgatgacaccaagctaaccctccacggtttacag
caatactatatcaaactcagcgaggcggaaaagaaccggaaactcaacgagttattggat
aatcttgagttcaaccaagtcattatcttcgtcaagagcaccctccgcgcgaacgagttg
gacaagcttctgcgtgaatgcaacttccctagcattgcagtgcactctggagtgtctcag
gaagagcgtatcaaacgttataaggaatttaaagaattcaacaagcgcatctgcgtcgcg
accgatgtgttcggacgtggtatcgacatcgagcgtatcaaccttgccatcaattacgat
atgccggctgatgccgattcataccttcatcgtgtgggtcgtgctggccgttttggtacc
aaaggtctgtccatctccttcgtcagtagtgaggacgacatgaagactcttaaggatatt
gagaagcgattcgaagtggctctgcctgaatatcccgaagaaggagttgatgccagcacc
tacatggcgtaa
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