KEGG   Coccidioides immitis: CIMG_10247
Entry
CIMG_10247        CDS       T01114                                 
Name
(RefSeq) WD repeat protein
  KO
K12880  THO complex subunit 3
Organism
cim  Coccidioides immitis
Pathway
cim03013  Nucleocytoplasmic transport
cim03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cim00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CIMG_10247
  09122 Translation
   03013 Nucleocytoplasmic transport
    CIMG_10247
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cim03019]
    CIMG_10247
   03041 Spliceosome [BR:cim03041]
    CIMG_10247
Messenger RNA biogenesis [BR:cim03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     CIMG_10247
Spliceosome [BR:cim03041]
 Complex C
  Other components
   EJC/TREX
    CIMG_10247
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CIMG_10247
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st WD40 Beta-prop_WDR5 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_WDR3_2nd ANAPC4_WD40 WDR55 Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR75_1st Beta-prop_TEP1_2nd Beta-prop_Aladin EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd Cytochrom_D1 Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_HPS5 Beta-prop_NOL10_N CFAP251_N DSE1_N Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_SCAP WD40_RFWD3 eIF2A Beta-prop_SPT8 PAC11 Beta-prop_TEP1_C Beta-prop_Vps41 TP_0598_N Beta-prop_WDR41 PALB2_WD40 Beta-prop_NUP159_NUP214 Beta-prop_ACSF4 ASA1 Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 4557840
NCBI-ProteinID: XP_001239225
UniProt: J3K139
LinkDB
AA seq 359 aa
MPPPPPSQLIPKDRFGYLFGRLRTQSYTDPNARGPGSHSIRTLAWNPTGLLIATGSADRT
LRIWNPERPDVRYSTELRGHTSGIEQVAFNPVKESELASCSTDGTVRFWDVRSKNCVNRI
DVGGEAFTLSWSADGSVLLAGRMDDTLVPISVDSSSTPTNTTEPSKSGTTAAPYKSLSPH
KQPVRTNGTAFSYSPSNPDLFLTTGDGTVQIVSYPSFHTLHTLNAHTASCHCVSLSPTAR
YLAIGGGDSLISLWDTTDWICKRTVTSSGGGGVRGVSWSWDGRFIVGACDEPDCGGVGLE
IFHAETGESVFTIPVDGSHVVPAVAWHPSRYWLAYSIYADAMGPSSNGLRIVGAGGGGL
NT seq 1080 nt   +upstreamnt  +downstreamnt
atgccgcctcctcctccgtcccagctgatccccaaggatcgctttggctacttgtttggt
agactgagaacacagagctataccgatcccaatgcgcgtggacctggctcgcacagtatt
cgcactctggcatggaatcctaccggccttctcatcgcgacaggttctgccgaccgaaca
ctacgaatttggaacccagagcgccccgatgtgagatattcgactgagctacgcgggcat
acctctggcattgagcaggttgcttttaaccccgtcaaggaatccgagctagcgagctgc
tcaaccgatggaaccgtccgtttctgggacgtgcgatccaagaactgcgtgaaccgcatc
gatgttggcggagaagcattcactctctcctggtccgctgatggcagcgtgctcctcgca
ggaagaatggacgacactctcgtacccatctctgtcgactcttcctccacacctacaaac
accactgaaccctccaaatcgggtacaacagcggctccctacaaatccctttcgcctcac
aaacaacccgtccggaccaacggcaccgcattctcctactcaccctcgaacccggacctc
ttcctcaccaccggcgacggcaccgttcaaatcgtatcctacccctccttccacacactt
cacaccctcaacgcccacaccgcctcctgccactgcgtctccctctccccaacagcccgc
tacctcgcaattggcggtggagactccctaatctccctctgggacaccactgactggatc
tgcaagcgcaccgtgacgagttccggcggaggcggagtgcgcggcgtaagctggagctgg
gacgggcgattcattgtaggcgcgtgcgatgagccggattgcggcggtgttgggttagag
attttccatgcggagaccggggagagtgtgtttacgattccggttgatgggtcgcatgtt
gttcccgctgtggcgtggcatccgtcgaggtattggttggcgtattctatttatgcagat
gcgatgggcccgagtagtaacgggttgagaattgtaggtgctggtggtggtggattgtga

DBGET integrated database retrieval system