Coccidioides immitis: CIMG_12856
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Entry
CIMG_12856 CDS
T01114
Symbol
CIMG00584, CIMG00585
Name
(RefSeq) rad50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cim
Coccidioides immitis
Pathway
cim03440
Homologous recombination
cim03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CIMG_12856 (CIMG00584)
03450 Non-homologous end-joining
CIMG_12856 (CIMG00584)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cim03032
]
CIMG_12856 (CIMG00584)
03400 DNA repair and recombination proteins [BR:
cim03400
]
CIMG_12856 (CIMG00584)
DNA replication proteins [BR:
cim03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
CIMG_12856 (CIMG00584)
DNA repair and recombination proteins [BR:
cim03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
CIMG_12856 (CIMG00584)
BRCA1-C complex
CIMG_12856 (CIMG00584)
NHEJ (non-homologous end-joining)
MRX complex
CIMG_12856 (CIMG00584)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
AAA_21
SbcC_Walker_B
SMC_N
AAA_15
AAA_29
ABC_tran_CTD
Sugarporin_N
AAA_22
AAA_13
AAA_16
Motif
Other DBs
NCBI-GeneID:
24164483
NCBI-ProteinID:
XP_004445914
UniProt:
A0A0D8JSH1
LinkDB
All DBs
AA seq
1355 aa
AA seq
DB search
MSHDSSYDFFVFWVIELVVTELQRCVSFAVASIPIASTNLRFSEDRQAFNTRVCGMDFVR
SFDNTRSETIQFHTPLTLIVGYNGSGKTTIIECLKYATTGELPPNSKGGAFIHDPKLCHE
KEVLAQVKLAFKSTSGARMVVTRSLQLTVKKTTRQQKTLEGQLLMTKEGERTSISSRVAE
LDQIMPQYLGVSRAILDNVIFCHQDESLWPLSEPSVLKKKFDEIFEAQKYTKAIDNIKAL
RKKQNEELAKYKIMEQYAKEDKDKADRAEKRSIQLQEEIEALRAESHELSKEMKKAADLA
DKAWKESESYAEILGALEGKRIEVKSIQTSIDNLKQHLVEVDESEEWLESTLEQFGSRQA
EYREQEESLKEKYVDLKENIERNRHQLGLKQAEYGKHENDKAQFERQVERRGKLIRDIAR
QNNLRGFEGDLDEMEINEFMQRLQKLSRDRNQTLDRAKREAQVELREVQSLLNRLSQRKS
ALQEGKNAARNQISQNDKEADSYQHRLNEIEIDEGKLAILESRIEETEGRLQQAKDKAKT
ASWEKDLQTKNAELRSLEEESSLLNAELIEGTKKAGDLARLDHLKKELKDRERSLETMAS
AHGDRISQLISQAWNPSNIEQEFQSVLNEATVSLTKAQRDRDGASKELEYIEVTMKNARK
SLQQHKQELDDCVQRIREAIDDEPEEYPDVVKQKQSSLEMAKKDVDQYAGLGEYLGKCLE
AARQKKVCRTCGRGFKTEKEFHDFSLKLENLLKKATMNAEDENVVQLEEDLEIARNAQTY
YDTWVRLSNTTIPEAEKEISRLELEREELLVKVEDHDAIVSEKGESKRDIESLSKTVATI
AKYEGEIKTLKVQIQDLSTKQQQPGSSRTLEEIQDMIATIGEGCRELKRAIAKITNERDQ
SRTEITELELQLRDVRSELDNARFQLDKKASIEARLEEYRNLNTKQRESIEKADHDIESL
VPEVSKAQAKFDDINARAEQRERELQQEVSSLSDSLHQLDLASEDIVSYNDRGGPRQLER
SKREVENITKEIEQLEAEQGSLTRQLNAVSARLQDSENTKRQYSDNLRYRREMRALGEVR
AEIARLEAQNAEVDRARFKEESDRRTREYNFLSATQASKMGEMKSKDNQLLQLLADWNTD
YKDAAFKFKEAHIKVETTKAAVEDLGRYGGALDKAIMKYHSLKMEEINRIIEELWQKTYR
GTDVDTILIRSDNENAKGNRSYNYRVVMVKQDAEMDMRGRCSAGQKVLASIIIRLALAEC
FGVNCGLIALDEPTTNLDRDNIRSLAESLHDIIRTRQQQANFQLIVITHDEEFLRHMQCG
DFSDYYYRVSRSDKQKSIIERQSIAEVRILHYPVA
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atgtcacatgacagcagctatgacttctttgttttctgggtgatcgagctcgtggtaact
gaactgcaaagatgtgtaagtttcgcagtcgcatcgattcccatcgcatccactaatctc
cgctttagcgaagatcgacaagctttcaatactcgggtttgtggcatggacttcgttcgc
tcgttcgataacacgcgcagcgaaacgattcagttccataccccattaacattgattgtt
ggatacaatggatcaggaaagactacaattatcgaatgcctcaaatatgcaacaacggga
gaacttccacctaatagcaaaggcggcgcttttattcatgacccgaagttatgtcacgaa
aaagaagttttggcccaagtgaaactggcattcaagtctacgtccggcgcacggatggta
gtcacccgcagtttacagctcacggtgaagaaaacgacgaggcaacagaaaacgctagaa
gggcagttgctgatgacgaaagagggcgagcggacttctatatcctctcgagttgccgag
ttagaccagattatgccccaatatctaggcgtttctagggcaattcttgacaatgtgatt
ttttgccatcaggatgagagtttgtggcccctgagcgagccgtctgtactaaagaaaaaa
tttgacgaaattttcgaggcgcaaaaatacaccaaggcgattgataatattaaggctttg
aggaaaaaacagaatgaggaattggctaagtataaaattatggaacagtatgcgaaggag
gataaggacaaagctgatagggcggagaagaggtccattcaacttcaagaagagatcgaa
gcacttcgagcggagagccatgaactgtccaaagaaatgaaaaaggctgcagatcttgct
gacaaggcttggaaagagtccgaaagctacgctgagattctgggtgcgttggagggaaaa
cgcatcgaagtaaaaagtatccaaactagcatcgacaatctgaagcagcatcttgtggag
gtagatgagtctgaggagtggcttgaatccacattagagcagttcgggtctcggcaggca
gagtatcgagagcaagaagagtccctgaaagagaagtatgtggacttaaaagagaatata
gagcggaatcggcatcaattgggcctcaaacaggctgaatatgggaagcatgagaatgac
aaagctcagtttgaaaggcaagtggaaagacgtggcaagttgatcagggatatcgcccga
caaaataatttacgtgggtttgaaggcgatcttgatgagatggaaatcaatgaatttatg
cagaggctgcagaaactttctagggaccggaatcaaactctcgacagagcaaagcgagag
gcccaagtggaattacgcgaagtgcaaagcctgctgaatcggctaagtcagcgaaagtcg
gcccttcaggaggggaagaatgcggctaggaatcaaatatctcaaaatgataaagaagcc
gattcttaccagcatcgcctcaacgaaatagagatagacgaagggaagctagcaatttta
gagtcacgaatagaggaaaccgaagggcgtctgcagcaagcaaaggacaaagcgaagact
gcttcgtgggaaaaggatcttcagaccaagaacgcagagcttcgctcgttagaagaggaa
agctctttattaaacgcggaattgattgagggaactaaaaaggcaggagaccttgcccgc
ctggatcacctcaaaaaggagcttaaagatagggagcgcagcctggaaacgatggcaagc
gcccacggtgacaggatatcccagctcataagccaagcatggaacccttcgaatatcgaa
caagaattccagtcggttttgaatgaagccactgtttctttgaccaaggcccagcgtgac
agagacggggcaagcaaagaattggagtacattgaagtgacaatgaaaaacgcacgcaag
tccctccagcagcacaagcaagaattggacgactgtgttcagaggattcgcgaagccatc
gatgatgaaccagaagaatatcccgacgttgtcaagcagaagcaatcgtccctcgaaatg
gcaaaaaaagatgttgaccagtacgcaggcttaggggagtatttgggcaagtgtcttgaa
gcagcaagacagaaaaaagtctgtcggacttgtggaagaggtttcaaaacggaaaaagaa
ttccatgatttcagcctgaagcttgaaaatcttctgaagaaggcaacgatgaacgccgaa
gatgagaatgttgtgcagttggaagaagaccttgagattgccaggaacgcgcagacgtat
tacgatacctgggttcgtctctctaatacaactatccctgaagcagagaaggaaataagt
cggcttgaattggaacgagaagaattactggtaaaggtggaggatcatgatgcgattgtc
agtgagaaaggcgaatcgaaaagggatattgaatctttatcgaaaaccgttgccactatt
gcgaagtatgagggtgaaatcaaaaccctcaaagttcagatccaagatctctctactaag
cagcaacagccgggaagctcgcgaacgttggaagaaattcaagacatgatcgcaacaatt
ggagaaggatgtcgtgagttgaagagagccatagcgaaaatcacaaacgaacgggaccag
tcgagaaccgaaatcactgaattggagcttcaactccgtgacgtacgtagcgagctcgat
aacgccagattccagctggataagaaggcgtcgattgaagctcgattggaagagtatcgc
aatctcaatacaaagcagcgcgagagcattgagaaggcagaccatgatatagaaagcctt
gtcccagaggtttcgaaggcgcaagccaagtttgacgatattaatgctcgtgcagagcaa
agggagagagagcttcaacaagaagtatctagtctgagcgatagtttgcaccaacttgat
cttgcaagtgaggatattgtttcctacaatgataggggaggcccacgtcaactggaaaga
agtaaacgtgaggtagagaatatcacaaaggaaattgagcaattggaagcggagcaggga
tcgcttacgagacagctcaatgctgtttcggctcgattgcaggatagtgaaaacacaaaa
cggcaatattcggataatcttcgatatagacgggaaatgagagcgttaggggaagttagg
gcagaaatagcgcgattggaggcacaaaatgctgaagtcgaccgcgctcgattcaaagag
gaatcagaccgccggacacgagaatataacttcctttctgcgacacaagccagcaagatg
ggcgaaatgaagtcgaaggataaccagctcttgcagctactcgcggattggaacacagac
tacaaagatgcagcatttaaattcaaggaagcccatattaaagtggaaaccacgaaggct
gcggtggaagaccttggacgatatggcggtgctttagacaaagctatcatgaaataccac
agcttaaagatggaggagattaaccgcatcatcgaggaactctggcaaaaaacttaccga
ggcacggacgttgacacgattctcattcggtctgataatgagaacgctaagggcaaccgt
tcatataattatcgcgtcgtcatggtcaagcaagatgccgaaatggacatgcgaggtcgc
tgtagtgcgggccaaaaagtgcttgctagtattatcatccgcctcgccctggcagaatgt
tttggcgtgaattgcggcttgattgcgctggacgagcccacgaccaaccttgaccgagac
aacattcggtctctggcggagtcactgcatgatatcattcggactagacagcagcaggcg
aactttcagcttattgttatcacacacgatgaggagttcctaagacatatgcaatgtggc
gatttcagtgattattattatcgggtatcgagaagcgacaagcagaaatcgattatcgag
aggcaatctattgctgaggtgagaattcttcactaccctgttgcatga
DBGET
integrated database retrieval system
