KEGG   Cebus imitator (Panamanian white-faced capuchin): 108283863
Entry
108283863         CDS       T08783                                 
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cimi  Cebus imitator (Panamanian white-faced capuchin)
Pathway
cimi03030  DNA replication
cimi03410  Base excision repair
cimi03420  Nucleotide excision repair
cimi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cimi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    108283863 (LIG1)
   03410 Base excision repair
    108283863 (LIG1)
   03420 Nucleotide excision repair
    108283863 (LIG1)
   03430 Mismatch repair
    108283863 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cimi03032]
    108283863 (LIG1)
   03400 DNA repair and recombination proteins [BR:cimi03400]
    108283863 (LIG1)
Enzymes [BR:cimi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     108283863 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     108283863 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     108283863 (LIG1)
DNA replication proteins [BR:cimi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    108283863 (LIG1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     108283863 (LIG1)
DNA repair and recombination proteins [BR:cimi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     108283863 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     108283863 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     108283863 (LIG1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C PucR Presenilin
Other DBs
NCBI-GeneID: 108283863
NCBI-ProteinID: XP_017355925
Ensembl: ENSCCAG00000022254
LinkDB
Position
Unknown
AA seq 919 aa
MQRSIMSFFHPKKEGKAKKAEKEASNSSREMEPPPKVALKEWNGVVSESDSPVKRPGRKA
ARVLGSEGEEEDEDLSPAKGQKPAPDCPPVSPPRPATSPESNPSLSDTSPMDSSPSGIPK
RRTARKQLPKRTIEEVLEEESADKDREAKRKKEEEEAETPKENLTEAEVATEKEREDGDQ
PTAPPKPLKTSEAETPMESISESEVATKQELQEEEEQAKPPCRAPKMLSSFFTPRKPAIK
KEVKEEEPGAPGKEGAEGPLDPSGYNPAKNNYHPIEDACWKPGQKVPYLAVARTFEKIEE
VSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNQLGPPQQGLELGVGDGVLLKAVAQA
TGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFTKFRDIARLTGSASTA
KKIDIIKALFVACRHSEARYIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMV
DAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGLERLPEHCKLSPGIPLK
PMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHALESGEVKIFSRNQEDNTGKYPDI
ISRIPRIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFD
LIYLNGESLVREPLSRRRQLLRENFVETEGEFLFATSLDTKDVEQIAEFLEQSVKDSCEG
LMVKTLDVDATYEIAKRSHNWLKMKKDYLSGVGDTLDLVVIGAYLGRGKRAGRYGGFLLA
CYDEDSEELQAICKLGTGFSDEELEAHHQSLQALVLPSPRPYVRIDDAVTPDHWLDPSAV
WEVKCADLSLSPIYPAARSLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQS
QIQNQQGEEDTGSDPEDTY
NT seq 2760 nt   +upstreamnt  +downstreamnt
atgcagcgaagtatcatgtcatttttccaccccaagaaagagggtaaagcgaagaaagct
gagaaggaggcatccaacagcagcagagagatggagccccctccaaaggtggcactgaag
gagtggaatggagtggtgtctgagagtgactctccagtgaagaggccagggaggaaggcg
gcccgagtcctgggcagtgaaggggaagaggaggatgaagaccttagccctgccaaaggc
cagaagcctgccccggattgcccaccggtctcccctccccgccctgctacatctcctgag
agcaacccttccctctccgacacctctcccatggatagctccccatcagggatcccgaag
cgtcgcacagctcggaagcagctcccaaaacggaccattgaggaagtcctggaagaggag
agtgcagacaaggacagagaagccaagaggaagaaggaggaggaagaagcagagaccccg
aaagaaaacctcacagaggctgaagtggcaacagagaaggaaagagaagatggggaccag
cccaccgcacctcccaaacccctgaagacctctgaggcagagaccccgatggaaagcatt
tcagagtctgaggtggccacaaaacaggagctgcaggaggaggaggagcaggccaagcct
ccctgcagagctcccaagatgctcagcagcttcttcactccccggaagccagcaatcaaa
aaagaagtgaaagaagaggagccgggggctccgggaaaggagggagctgagggacccctg
gacccatccggttacaatcctgctaagaacaactaccatcccatagaagacgcctgctgg
aaaccgggccagaaggtcccttacctggcggtggcccggacatttgagaagattgaggag
gtttctgctcggctgcggatggtggagacactgagcaacttgctgcgctccgtggtggcc
ctgtcgcccccagacctcctccctgtcctctacctcagcctcaaccagcttgggccgccc
cagcagggcctggagcttggcgtgggtgatggcgtacttctcaaggcagtggcacaggcc
acaggtcggcagctggagtccgtccgggctgaggcagccgagaagggtgacgtggggctg
gtggccgagaacagccgcagcacccagaggctcatgctgccacctcctccgctcactgcg
tccggggtcttcaccaagttccgagacatcgccaggctcactggcagtgcttccacagcc
aagaagatagacatcatcaaagccctctttgttgcctgccgccactcagaagcccggtac
atcgccaggtccctgagcggacggctgcgcctcgggctggcagagcagtcagtgctggct
gccctctcccaggccgtgagccttacgcccccaggccaagaattcccaccggccatggtg
gatgctgggaagggcaagacagcagaggcccgaaagacgtggctggaggagcaaggcatg
atcctgaagcagacgttctgtgaggtgcctgacctggaccgaattgtccccgtgctgctg
gagcatggcctggaacgtctgccggagcactgcaagctgagcccaggaattcccctgaaa
ccaatgttggcccatcccacgcggggcgtcagtgaggttctgaaacgctttgaggaggca
gctttcacctgtgaatacaaatatgacgggcagagggcacagatccatgctctggaaagc
ggggaggtgaagatcttcagcagaaaccaggaagacaacactggaaagtacccagacatc
atcagccgcatccccaggattaaactcccatcggtcacatccttcatcctggacaccgaa
gctgtggcttgggaccgggaaaagaagcagatccagccattccaagtgcttaccacccgc
aaacgcaaggaggtggatgcgtctgagatccaggtgcaggtgtgtttgtacgccttcgac
ctcatctacctcaacggagagtccctggtacgtgagcccctttcccgacgccggcagctg
ctccgggagaactttgtggagacagagggcgagttcctcttcgccacctccctggacacc
aaggacgtcgagcagatcgccgagttcctggagcagtcggtgaaagactcctgcgagggg
ctgatggtgaagaccctggacgtcgatgccacctatgagatcgccaagagatcgcacaac
tggctcaagatgaagaaggactacctcagcggcgtgggtgacactctggacctggtggtg
atcggtgcctacctgggtcgggggaagcgtgccggccgatacgggggcttcctgctggcc
tgctacgacgaggacagtgaggagctgcaggccatatgcaagcttggaactggcttcagt
gacgaggagctagaggcgcatcaccagagcctccaggccctggtgctgcccagcccacgc
ccctatgtgcggatagatgacgcggtgactcccgaccactggctggaccccagcgccgtg
tgggaggtgaagtgcgctgacctctccctctctcccatctaccctgctgctcggagcctg
gtggatagtgacaaaggcatctcccttcgcttccctcggttcattcgagtccgtgaagac
aagcagccggagcaggcgaccaccagtgcccaggtagcctgtttgtaccggaagcaaagt
cagattcagaaccagcaaggcgaggaggacacaggctctgaccctgaggatacctactaa

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