Cebus imitator (Panamanian white-faced capuchin): 108288857
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Entry
108288857 CDS
T08783
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
cimi
Cebus imitator (Panamanian white-faced capuchin)
Pathway
cimi03015
mRNA surveillance pathway
cimi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cimi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108288857 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
108288857 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cimi03019
]
108288857 (PABPC4)
03041 Spliceosome [BR:
cimi03041
]
108288857 (PABPC4)
Messenger RNA biogenesis [BR:
cimi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108288857 (PABPC4)
mRNA cycle factors
Stress granule specific factors
108288857 (PABPC4)
Spliceosome [BR:
cimi03041
]
Complex C
Other components
Complex C specific factors
108288857 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_occluded
RRM_7
RRM_10
RBD_RDR6
RRM_3
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
108288857
NCBI-ProteinID:
XP_017363473
Ensembl:
ENSCCAG00000037306
UniProt:
A0A2K5SEX8
LinkDB
All DBs
Position
Unknown
AA seq
659 aa
AA seq
DB search
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEK
HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTT
TQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYK
YASSVRSPHPAIQPLQAQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSN
LAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgcggccagcagctaccccatggcctccctgtacgtgggcgacctacactcg
gacgtcaccgaagccatgctgtacgaaaagttcagccccgcggggcctgtgctgtccatc
cgggtctgccgtgatatgatcacccgccgctccctgggctatgcctacgtcaacttccag
cagccggctgatgctgagcgggctttggacaccatgaactttgatgtgattaagggaaag
ccaatccgcatcatgtggtctcagagggatccctctttgagaaaatctggtgtgggaaac
gtcttcatcaagaacctggacaaatctatagataacaaggcactttatgatactttttct
gcttttggaaacattctatcctgcaaggtggtgtgtgatgagaacggctcgaagggttat
gcctttgtccacttcgagacccaagaggctgccgacaaggccatcgagaagatgaatggc
atgctcctcaatgaccgcaaagtatttgtgggcagattcaagtctcgcaaagagcgggaa
gccgagcttggagccaaagccaaggaattcaccaatgtttatatcaaaaacttcggggaa
gaggtggatgatgagagtctgaaagagctattcagtcagtttggtaagaccctgagtgtc
aaggtgatgagagatcccaacgggaaatccaaaggctttggctttgtgagttacgaaaaa
cacgaggatgccaataaggctgtggaagagatgaatggaaaagaaataagtgggaaaatc
atatttgtaggccgtgcacaaaagaaagtagaacggcaggcagagttaaaacggaaattt
gagcagttgaaacaggagagaattagtcgatatcagggggtgaatctctacattaagaac
ttggatgatactattgatgatgagaaattaaggaaagagttttctccttttggatcaatt
accagtgctaaggtaatgttggaagatggaagaagcaaagggtttggcttcgtctgcttc
tcatctcctgaagaggcaaccaaagcagtcactgagatgaatggacgcattgtgggttcc
aagccactatatgttgccctggcccagaggaaggaagagagaaaggctcacctgaccaac
cagtatatgcaacgagtggctggaatgagagcacttcctgccaatgccatcttaaatcag
ttccagcctgcagcaggtggctacttcgtgccagcagtcccacaggctcagggaaggcct
ccatattatacacctaaccagttagcacagatgaggcctaatccacgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccaagtgctatacgccagtctgggcctcgtcca
actcttcgccatctggctccaactggtaatgctccggcctctcgtggcctccctactacc
actcagagagtcgggtctgagtgcccggaccgcttggctatggactttggtggggctggt
gccgcccagcaagggctgactgacagctgccagtctggaggcgttcccacagctgtgcag
aacttagcgccacgagctgctgttgctgctgctgctccccgggctgttgccccctacaaa
tacgcctccagtgtccgcagccctcatcctgccatacagcctctgcaggcacagcctgcg
gtccatgtgcaggggcaggagccactgactgcctccatgctggctgcagcacccccccag
gaacagaagcagatgctgggagaacgcttattcccactcatccaaacaatgcattcaaac
ctggctggaaaaatcacgggaatgctgctggaaatcgacaactctgagctgctgcacatg
ttagagtcccctgagtctctccgctccaaggtggatgaagctgtagcagttctacaggct
catcatgccaagaaagaagctgcccagaaggtgggcgctgttgctgctgctacctcttag
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