Cebus imitator (Panamanian white-faced capuchin): 108297013
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Entry
108297013 CDS
T08783
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
cimi
Cebus imitator (Panamanian white-faced capuchin)
Pathway
cimi05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
cimi00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
108297013 (SETX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cimi03021
]
108297013 (SETX)
Enzymes [BR:
cimi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108297013 (SETX)
5.6.2.5 RNA 5'-3' helicase
108297013 (SETX)
Transcription machinery [BR:
cimi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108297013 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
UvrD-helicase
AAA_30
AAA_22
Viral_helicase1
ResIII
Helicase_RecD
SLFN-g3_helicase
AAA_16
nSTAND3
Motif
Other DBs
NCBI-GeneID:
108297013
NCBI-ProteinID:
XP_017375122
Ensembl:
ENSCCAG00000030411
LinkDB
All DBs
Position
Unknown
AA seq
2719 aa
AA seq
DB search
MSTCCWCTPGGVSTTDFLKHYASNTRSSEFQTANEDLCYCLECVAEYHKARDELPYLHEV
LWELETLRLINHFEKSMKAEIGDDDELYIVDNNGEMPLFDITGQDFENKLRVPLLEILKY
PYLLLHERVNELCVEALCRMEQANCSFQVFDKHPGIYLFLVHPNEMVRRWAILTARNLGK
VDRDDYYDLQEVLTCLFKVIELGLLESPDIYTSSVLEKGKLILLPSHMYDTTNYKNYWLG
ICMLLTILEEQAMDSLLLGSDKQNDFMQLILHTMERQSDDDSVDPFWPALHCFMLILDRL
GSKVWGQLIDPIEAFQTIINNTSYNREIQHIRNSSVRTKVEPESYLDDMVTCSQIVYNFN
PEKTKKDSGWRTAICPDYCPNMYEEMETLANVLQSDIGQDMRVHNSTFLWFIPFVQSLMD
LKDLGVAYIVEVIHHLYSEVKDVLNQTDAVCDKVTEFFLLILVSVIELHRNKKCLHLLWV
SSQQWVEAVVKCAKLPTTAFARSSEKSSGNCSKGTAMISSLSLHSMPSNSVQLACVQLIR
SLLKEGYQLGQHSLCKRFWDKLNLFLRGNLSLGWQLTSQETHELQTCLKQIIRNIKFKAP
PCNTVVDLTSTCKTSPASYNKEESEQIGKKPRKDTHCWGESSPTFSKEPVKVQDNVLIKA
DNSIEGDNNEQNSIKDVKLEDHLSAGSCLKRSSKNHFTERAEGPIKISTRKSVKENSSYT
PKDCTSRNGPERGCDRGIIVSTHLLTDSSTDALEKVSASNEDLSLKGNGLAKTSKRKTKV
QKDEIRAKLSHVIKKHHRKSTLVNNAINLDENLTISNIESFYSRKDTGVQKGDGFIHNLS
LDTSGVLDGDKNGEQKSQNNLLPKEKQLKNAELDIFSSRENNCKIQECHVDKDLIPFTEM
TDTLVKKTLVKKSSSFNDLMTVPESRDKEMSNNTNLISFSLTREQAPVISPKSDALTDSQ
IDRDLHKLSLIAQASVIKFPSDSPQHSSQLQRKVKEHKRCFTANQNNVGDTSCGQVIIIS
DSDDDDETVLSLEKLTKQDKICIEKESPGQHVSIVNSKEEKNPVKEEKTKSLLQLEECDS
QCFEFESPFEVFSVWQDNLDNNNSVQDDEKNCLTHVANITNDQGCTDYVSEVVKKGAEGI
EEHVRRQNSSISVEEFCEIEVKKPKRKRSEKPMAEDLVRPSSSVINEGQSDTNKRDLVGN
DFKSIAGRTATTNSSIQRATTVSQKKSSRLCTYSEPVKKVPVSKNPKKTHSDAKKGQNKS
SSYLSCRTTPAIVIPKKFRQCPEPTSTAERLRLKKAPRMAFELSQRSLDYLAQLRDHGRA
VGVVDAPKKTKLIPPQNLSVRNNKKLLISQELQMRRQMRPKSQKNRRGLSGCKSTDATRT
GSVHTAQKSDTSVPESDRSDYSCTGGTEALASSNGKQIIKCVPSEPETTKAKHGSLVTDD
VCLLNQCDSVVLNGTIPINEVIVATSEDPLGGGDLSVHHIETTTLKEGEPDPSSDTEEDN
LFLTQHDPEDMDLCSQMENDNYKFIELIHGKDTVQVEEDSVNRPQLESLIGTKCKYKDCV
EATKNQGEYCSEHSEVKAADEDVFRKPGLPLSASKPLRPTTAKIFSSKSTSRIASLSKSL
ESSPPSLKNKSNGIQSILKVPQPTPLVSQKPVGEMNSCNILQPQSPNNSRQGCKVAFGES
KYFPSSSPVNIFLTSQSVSDTFVKEVLKWKYEMFLNFNQCGPPASLCQCISRPVPVRFHD
CGDYFSVFFPLMVLNTFETVAQEWLTSPNKENFYQLQVRKFPADYIKYWEFVVYLEECEL
AKQLYPKENDLVFLIPERINEEKKDTEGNDMQDLREYHCGYVHKFRRTSVMRNGKFECYL
SIQTQENFPANLNELVNCIVISSLVTTQRKLKAMSLLGSRNQLARAVLNPNPMDFCTKDL
LTTTSERIIAYLRDFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYR
LLTENQRKGHSDENSNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCG
DINLVRLGPEKSINNEVLKFSLDSQVNHRMKKDLPSHVQEMHRRKEFLDYQLDELSRQRA
LCRGGREIQRQELDEKISEVSKERQELASKIKEVQGRPQKTQNNIILESHVICCTLSTSG
GLLLESAFRGQGGVPFSCVIVDEAGQSCEIETLTPLIHRCNKLILVGDPKQLPPTVISMK
AQEYGYDQSMMARFCKLLEENVEHNMISRLPILRLTIQYRMHPDICLFPSNYVYNRNLKT
NRQTETIRCSSDWPFQPYLVFDVGDGSERRDNDSYVNVQEIKLVMELIKLIKDKRKDVTF
RNIGIITHYKAQKTMIQKDLDKEFDRKGPAEVDTVDAFQGRQKDCVIVTCVRANTMQGSI
GNSSVPSTLYWDREFLASLQRLNVTITRAKYSLFILGHLRTLMQLPRSFCVHVNYSPFFS
PEPKCLHWALKENQHWNQLIQDAQKRGAIIKTCDKNYRHDVTKILKLKPVLQRSLTHPPA
IAPEVSRPQGGLPSPKLDSGFAKTSFAASLYHTPSDSKEAPLTVISKDPERPPVQDQLRD
PRLLKRMGVEVKGGIFLWDPQPSSPQHPGVTPPAGEPGFPGVHQDLGNVLQPSALAAALS
SLRPPVQGEPPTASTEASTCQSKCDDPDGELCHRRDARAFSEGEQENCGSETHYTKRNSR
WDKRRLEKEESNSKKRKLL
NT seq
8160 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgttgttggtgtacaccaggtggtgtttccaccactgacttcctaaagcac
tatgcgtccaacactcgatccagcgaatttcaaacagccaatgaagacctctgctactgt
ttagagtgtgtagctgaataccacaaagcaagagatgaattgccatacttgcatgaggtt
ttatgggagttagaaaccttacgtctcataaatcactttgaaaaatccatgaaggcagaa
attggagatgatgatgaattatatatagtagacaacaatggggagatgccactgtttgac
attactggacaagactttgaaaataagcttcgagttcctcttcttgaaatactgaaatat
ccttacttgcttctacatgaacgtgttaatgagttatgtgttgaagcactttgtcggatg
gaacaagccaattgctcctttcaggtgtttgacaaacatccagggatctatttgtttttg
gtccatcccaatgaaatggttcggcgttgggctatcttgactgcaagaaacttggggaaa
gtggacagagatgattattatgacttacaagaggttttaacttgcctttttaaagtcatt
gagttggggcttttggagagtccagacatttatacttcttctgtcctcgagaagggtaaa
ctgattcttctgccctcacacatgtatgatactaccaactacaaaaactattggttaggt
atttgcatgttgctgaccattcttgaggaacaagctatggattcactattgttgggctca
gacaaacaaaatgattttatgcagttaatacttcacaccatggagaggcaatcagatgat
gatagtgtggatcctttctggccagcattacactgttttatgttgattctggatcgtctt
ggatctaaggtctggggtcaacttattgatcctattgaagcatttcaaaccattatcaac
aacacaagctacaatagagagattcagcatatacggaacagctctgtaaggaccaaggta
gaaccggagtcatatttggatgatatggtgacgtgcagccagattgtatacaattttaat
cctgaaaagaccaaaaaggattctggatggagaacagccatttgcccagattattgtcct
aacatgtatgaagaaatggaaacgttagccaatgtacttcagtcggatattggccaagac
atgcgtgttcataacagcacatttttatggttcataccttttgttcagtccctcatggat
cttaaggatttgggtgtggcttacatagtagaggttattcatcatctgtactctgaagtc
aaagatgtcctcaaccaaacagatgccgtctgtgacaaagtcactgaattttttcttcta
attttggtatcagtgattgaactgcatagaaataaaaaatgtttgcatttgctctgggta
agttcccaacaatgggtggaagctgttgtcaaatgtgccaagcttcctaccactgcattt
gcacggagttctgagaaatcatctggaaattgctccaaaggaacagcaatgatatcatca
ctgtcgttgcattcaatgccatctaactctgtacaacttgcttgtgtgcagctgattaga
agtctccttaaagaaggttatcagcttgggcagcattctctttgcaagcgattctgggat
aagcttaacttattccttagaggaaatttatctctaggttggcagttgactagtcaggaa
acccatgagctacaaacttgcttaaagcaaattattagaaacataaaatttaaagcacct
ccatgtaatactgttgtggatctgacttctacatgtaaaacctctcctgcatcttataat
aaagaagaaagtgagcaaatagggaagaagcctagaaaagatacgcattgttggggagag
tccagcccaacgttttctaaagaaccagtgaaagtgcaagacaatgtattgatcaaagca
gataacagtatagaaggtgacaataatgagcaaaattctataaaggatgtaaaactagaa
gaccatctctcagctgggtcatgcttaaagcggagtagtaaaaaccattttactgaaaga
gctgaaggtccaattaaaataagtacaaggaagtctgtaaaagagaattcttcatataca
ccaaaggattgtacttcaagaaatggtccagaaaggggatgcgacagaggaataatagta
tcaacacatttattgactgattctagtactgatgctttggaaaaagtgtccgcatcaaat
gaagatttgtctttaaagggcaatggtcttgctaaaacctcaaaacgaaaaactaaggta
cagaaagatgaaatccgtgcaaagttatcacatgtaataaagaagcatcacaggaagagt
actttggtcaataatgctatcaatttagatgaaaatctgactatatctaacattgagagt
ttctattcaaggaaagacacaggagttcagaaaggagatggtttcatacacaatctttct
ttagacactagtggtgttctggatggtgataagaatggagaacaaaaatctcagaacaat
ttattgccaaaagagaaacaattaaagaatgcagagttagatattttctcttcccgtgaa
aacaattgtaaaatacaggaatgtcatgttgataaagatttgatcccctttacagaaatg
accgatactttagtgaagaaaactttagtgaagaaatcatcttcctttaacgatcttatg
actgtacctgaatcaagagataaggagatgagtaataatacgaatctgatttcttttagc
ttgacaagagaacaggcccctgttatcagtcctaaatctgacgccttaacggattctcag
atagacagagaccttcacaaattatctttaatagctcaagccagcgttattaagtttcca
tcagattcacctcagcactcatcccagctacaaaggaaagtgaaagaacataaaagatgt
ttcacagctaaccaaaataatgttggagatacctcctgtggacaggttattattatttca
gattctgatgatgatgatgaaacagtcctgagtcttgagaaactcactaaacaggacaaa
atatgcattgagaaggaaagcccagggcagcacgtttcaatagttaatagtaaggaggag
aagaatccagtaaaggaagaaaagacaaagtctcttttgcagcttgaggaatgtgattct
cagtgttttgagttcgaaagtccatttgaagtgttttcagtttggcaagataatctagac
aataataattcagttcaagatgatgagaaaaattgtttgactcatgtagccaatatcaca
aatgatcagggttgtacagattatgtatctgaagttgttaaaaaaggagcagagggcatt
gaagaacacgtgagacgacagaacagtagcatttctgttgaggaattttgtgaaattgaa
gtaaaaaagcctaagagaaaacgatctgaaaaaccaatggctgaagatcttgtgaggcct
tcatcttctgtcataaatgagggccagtctgatactaacaagagagatcttgttggaaac
gattttaaaagcatagctggaaggactgcaactaccaattcaagtattcagagagccact
acggtttcacaaaagaagtcgtcaaggctttgtacttattcagaacctgtcaagaaagtt
ccagtttctaagaaccctaagaaaacgcattcagatgccaaaaaaggacagaataagagt
tccagttacctaagttgtaggacaactcctgctatagtgataccaaagaaatttcgtcag
tgtcctgaaccaacttcaacagctgagagacttcgcctgaaaaaggctcctcgtatggca
tttgagttgtcccagagatcattagattatttagctcaattacgtgatcatggcagagct
gttggggtagttgatgctccaaaaaagactaaattaattcctcctcagaacctgtctgtc
agaaataataagaaactgctgattagtcaagaacttcagatgcgaaggcagatgagaccc
aaatcacaaaaaaatagaagaggactttctggttgtaaaagtaccgatgctacaagaaca
ggttctgtgcatacagcacagaaatctgacacatctgtaccagaatctgataggtcagat
tatagttgtacaggaggaactgaggctcttgccagcagtaatgggaaacagataataaaa
tgcgtgccttctgaaccagaaaccacaaaagcaaaacatggatctctagtgactgatgat
gtttgccttttgaaccagtgtgattctgtagtgttaaatggaacaataccaataaatgaa
gtaattgtcgctacttcagaggaccctctaggtggaggtgatctgtcggtacatcatata
gaaacgacaactttgaaagagggagagcctgaccccagcagtgatacagaggaagataac
ttatttttaacacaacatgatcctgaagatatggatttgtgttcgcaaatggagaatgat
aattataaattcattgaactaattcatggaaaagatacagttcaggttgaagaagattct
gtaaatcggcctcagttggaatctttgattggcacaaagtgtaagtacaaagattgtgtt
gaagccacgaaaaatcagggtgaatactgctcggaacactctgaagtgaaagcagcagat
gaagatgtatttcgtaaacctggcttgcctctttctgcatctaaacctttgagacctacc
actgctaagatttttagctcaaagagtacttcacgaattgctagtctttctaaatctttg
gaatcttctccaccatctctaaaaaataaatcaaatgggatacagtcaattttgaaagta
ccacagccaactccccttgtatctcagaagccagtgggtgaaatgaattcatgcaacatt
cttcagcctcagtctccgaataattccaggcaaggttgcaaagttgcatttggcgaaagc
aaatattttccatcttcctctccagtaaacattttcttgacatcgcagtctgtgtctgac
accttcgttaaagaggtcttaaaatggaaatacgaaatgtttttgaactttaatcagtgt
gggccccctgcaagcctttgtcagtgcatctcaagacctgtgcctgtcagatttcacgat
tgtggagattattttagtgtttttttccctttgatggtgttgaatacttttgaaacagtg
gcacaggaatggcttacctctccaaataaagagaatttctatcagttgcaagtacgaaaa
tttcctgccgattatataaaatactgggagtttgtggtttatctggaagaatgtgaactg
gctaaacaactttatccaaaggaaaacgatttggtgtttttaattcctgagagaataaat
gaagagaagaaagatacagagggaaatgacatgcaagatctccgtgaatatcattgtggc
tatgttcataaattccgccgcacttcagtcatgcgtaatggaaaatttgagtgttacctt
tccatccagactcaagagaactttccggccaatttaaacgaacttgtgaattgtattgta
atcagttctctggtgactacacaaaggaagttgaaagccatgtctctgttgggtagtcgg
aaccaactggctagagctgttctgaatccaaaccctatggacttctgtacaaaagattta
ctaactacaacatctgagagaattattgcctacttaagagatttcaatgaagaccaaaag
aaagcaatagaaactgcatatgctatggtgaaacactcaccatcagttgccaaaatctgc
ctgattcatggaccacctggaacaggaaaatcaaaaacaattgttggcctcctttatcgc
ctactgacagagaaccagaggaaggggcattcagatgaaaattccaatgccaaaatcaaa
caaaaccgtgtcctcgtgtgtgcaccttccaacgcagctgttgatgaactcatgaaaaaa
attattcttgaattcaaagaaaaatgtaaagacaagaagaatcctttaggaaactgtgga
gatatcaatttagtacgactgggcccagaaaagtctattaataacgaggttctaaagttc
agtttggacagccaagtaaaccacagaatgaaaaaagacttaccttctcatgttcaggag
atgcatagaagaaaggaatttctagattatcagttggatgaactttcccggcagcgagct
ctctgccgaggtggacgggaaatacagaggcaagaattagatgaaaaaatttccgaagtt
tctaaggaaaggcaggaacttgcttctaaaattaaagaggttcaaggacgcccacagaaa
acacagaataacatcatcttagagtcccatgtcatctgctgcacattgagcacaagtggt
ggtttactacttgaatctgcttttcgtgggcaagggggtgtccccttcagctgtgtcatt
gttgatgaggctggacagtcttgtgaaattgagactcttactccactcattcatcgctgc
aacaagcttatcctagtaggagatcctaaacagctccctcccacagtcatctctatgaaa
gcacaggagtatggctacgaccagtcaatgatggctcgcttctgcaaactgctggaagag
aatgtagaacacaacatgatcagcaggctgcctattttacggcttactattcagtacagg
atgcatccagacatatgtctcttcccttccaattatgtttataacagaaacttaaaaaca
aatagacaaacagaaaccattcggtgttcatcagactggccatttcaaccataccttgtg
tttgatgtcggagatggttcagaaagacgggataatgactcatatgtaaatgttcaagaa
ataaaactggtgatggaactaattaagctaattaaagacaaaagaaaggatgtcactttt
cgaaacattggcataataactcactacaaggcccagaagacgatgattcagaaggatttg
gacaaagagttcgatagaaaaggaccagcagaagtagatactgtggatgcattccagggt
cggcagaaggattgcgtgattgttacatgtgtcagagcaaataccatgcaaggttcaatt
gggaattcttctgtgcccagtaccctgtattgggacagagaattcctggcaagtttgcag
agattgaatgttaccatcacacgagccaagtacagcctcttcatcctcggacatttgagg
accctgatgcaacttcctaggagcttttgtgtacacgtgaactattcgccttttttcagc
ccagaacccaagtgtctacactgggctctcaaggaaaaccagcattggaatcagctgatt
caggatgctcagaagcgtggcgccattattaagacctgtgacaaaaactatagacacgat
gtaacgaagattctgaaactcaagcctgtgctgcagagaagtctcactcaccctcctgcc
atagccccagaggtgtccaggccacagggtggcttacccagccctaagctagacagtgga
tttgctaagacatcttttgctgcctctctataccacacaccctccgactccaaggaagct
cctctcactgttatttcaaaggaccctgaaagacctcctgttcaagaccaacttcgggac
ccacgactgctgaagaggatgggcgttgaggtcaaaggaggaatattcctatgggatcca
caaccctcgagcccccagcatcctggagtaacaccgcctgcaggagagccaggcttccct
ggcgttcaccaggacctgggtaacgtactacagccctctgctctagcggctgctctgagc
agcctcagacctcctgtgcagggtgaacctccaactgccagcaccgaggcttccacgtgt
cagagcaaatgtgatgacccggatggggagctctgtcataggagagacgctagggctttc
agtgaaggggagcaggagaactgtggttctgagacccattataccaagaggaactctcgc
tgggacaagaggagactggagaaggaggaaagcaattccaagaaaagaaagcttttatag
DBGET
integrated database retrieval system
