Cebus imitator (Panamanian white-faced capuchin): 108297050
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Entry
108297050 CDS
T08783
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
cimi
Cebus imitator (Panamanian white-faced capuchin)
Pathway
cimi03015
mRNA surveillance pathway
cimi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cimi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108297050 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
108297050 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cimi03019
]
108297050 (PABPC1)
03041 Spliceosome [BR:
cimi03041
]
108297050 (PABPC1)
Messenger RNA biogenesis [BR:
cimi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108297050 (PABPC1)
mRNA cycle factors
Stress granule specific factors
108297050 (PABPC1)
Spliceosome [BR:
cimi03041
]
Complex C
Other components
Complex C specific factors
108297050 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_5
RRM_10
RBD_RDR6
RRM_occluded
RRM_3
YflT
POP1_C
Motif
Other DBs
NCBI-GeneID:
108297050
NCBI-ProteinID:
XP_037591202
Ensembl:
ENSCCAG00000037733
LinkDB
All DBs
Position
Unknown
AA seq
571 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPPAPPSGYFMAAIPQTQNRAAYYPPS
QIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRPAVHVQGQEPL
TASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRS
KVDEAVAVLQAHQAKEAAQKAVNSATGVPTV
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctcgctctacgtgggggacctccacccc
gacgtgaccgaggcgatgctctacgagaagttcagcccggccgggcccatcctttccatc
cgggtctgcagggacatgatcacccgccgctccttgggctacgcgtatgtgaacttccag
cagccggctgacgcggagcgtgctttggacaccatgaattttgatgttataaagggcaag
ccagtacgcatcatgtggtctcagcgtgatccatcacttcgaaaaagtggagtgggcaac
atattcattaaaaatctggacaaatccattgataataaagcattgtatgatacattttct
gcttttggtaacatcctttcatgtaaggtggtttgtgatgaaaatggttccaagggctat
ggatttgtacactttgagacgcaggaagcagctgaaagagctattgaaaaaatgaatgga
atgctcctaaatgatcgcaaagtatttgttggacgatttaagtctcgtaaagaaagagaa
gctgaacttggagctagggcaaaagagttcaccaatgtttacatcaagaattttggagaa
gacatggatgatgagcgccttaaggatctctttggcaagtttgggcctgctttaagtgtg
aaagtaatgactgatgaaagtggaaaatccaaaggatttggatttgtaagctttgaaagg
catgaagatgcacagaaagctgtggatgagatgaatggaaaggagctcaatggaaaacaa
atttatgttggtcgagctcagaaaaaggtggaacggcagacggaacttaaacgcaaattt
gaacagatgaagcaagataggatcaccagataccagggtgttaatctttatgtgaaaaat
cttgatgatggtattgatgatgaacgtctccgtaaagagttttctccatttggtacaatc
actagtgcaaaggttatgatggagggtggtcgcagcaaagggtttggttttgtatgtttc
tcctctccagaagaagctactaaagcagttacagaaatgaacggtagaattgtggccaca
aagccattgtatgtagctttagctcagcgcaaagaagagcgccaggctcacctcactaac
cagtatatgcagagaatggcaagtgtacgagctgtgcccaaccctccagcacctccttca
ggttacttcatggcagctatcccacagactcagaaccgtgctgcatactatcctcctagc
caaattgctcaactaagaccaagtcctcgctggactgctcagggtgccagacctcatcca
ttccaaaatatgcccggtgctatccgcccagctgctcctagaccaccatttagtactatg
agaccagcttcttcacaggttccacgacctgctgttcatgtacaaggtcaagaacctttg
actgcttccatgttggcatctgcccctcctcaagagcaaaagcaaatgctgggtgaacgg
ctgtttcctcttattcaagccatgcacccttctcttgctggtaaaatcactggcatgttg
ttggagattgataattcagaacttcttcatatgcttgagtctccagagtcactccgttct
aaggtcgatgaagctgtagctgtactacaagcgcaccaagctaaagaggctgcccagaaa
gccgttaacagtgccaccggtgttccaactgtttaa
DBGET
integrated database retrieval system
