Cebus imitator (Panamanian white-faced capuchin): 108306573
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Entry
108306573 CDS
T08783
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1 isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cimi
Cebus imitator (Panamanian white-faced capuchin)
Pathway
cimi03020
RNA polymerase
cimi03420
Nucleotide excision repair
cimi05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
cimi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108306573 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
108306573 (POLR2A)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
108306573 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cimi03021
]
108306573 (POLR2A)
03400 DNA repair and recombination proteins [BR:
cimi03400
]
108306573 (POLR2A)
Enzymes [BR:
cimi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108306573 (POLR2A)
Transcription machinery [BR:
cimi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108306573 (POLR2A)
DNA repair and recombination proteins [BR:
cimi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108306573 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
108306573
NCBI-ProteinID:
XP_017387104
Ensembl:
ENSCCAG00000020938
LinkDB
All DBs
Position
Unknown
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcatgggggtggccccccctcgggggacagcgcatgcccgctgcgcaccatcaagaga
gtgcagttcggagtcctgagcccggatgaactgaagcgaatgtctgtgacggagggtggt
atcaaatacccggagacgactgagggaggccgccccaagcttggggggctgatggatcca
agacagggggtgattgagcggactggccgctgccaaacatgtgcaggaaacatgacagag
tgtcctggccactttggccacattgaactggccaagcctgtgtttcatgtgggcttcctg
gtgaagacaatgaaagttttgcgctgtgtctgcttcttctgctccaaactgcttgtggac
tctaacaacccaaagatcaaggacatcctggccaaatccaagggacagcccaagaagcgg
ctcacacatgtctacgacctttgcaagggcaaaaacatctgcgagggtggggaggagatg
gacaacaagtttggtgtggaacagcctgagggtgacgaggatctgaccaaagagaagggc
catggtggctgtggacggtaccagcccaggatccgacgttctggcctggagctgtatgcg
gaatggaagcacgttaatgaggactctcaggagaagaagatcctgctgagtccagagaga
gtgcatgagatcttcaaacgcatctcagatgaggagtgttttgtgctaggcatggagccc
cgctatgcgcggccagagtggatgatcgtcaccgtgctgcctgtgcccccactctccgtg
cggcctgctgttgtgatgcagggctctgcccgaaaccaggatgacctgactcacaaactg
gctgacattgtgaagatcaacaatcagctgcggcgcaacgagcagaatggtgcagcagcc
catgtcattgcagaggatgtgaagctccttcagttccatgtggccaccatggtggacaac
gagctgcctggcctaccccgtgccatgcagaagtctgggcgtcccctcaagtccctgaag
cagcggttgaagggcaaggaaggccgggtgcgggggaacctgatgggcaaacgagtggac
ttctcagcccgtactgtgatcacccccgaccccaacctctccattgaccaggttggcgtg
ccccgctccattgctgccaacatgacctttgcggagattgtcacccccttcaacattgac
agacttcaagaattagtgcgcagggggaacagccagtacccaggggccaagtacatcatc
cgagacaatggcgatcggattgacttgcgttttcaccccaagcccagtgaccttcatctg
cagaccggctataaggtggaacggcacatgtgtgatggggacattgttatcttcaaccgg
cagccgactctgcacaagatgtccatgatggggcatcgggtccgcatcctcccctggtcc
accttccgcttgaatcttagtgtgacaactccatacaatgcagactttgatggggacgag
atgaacttgcacttgccacagtctctggaaacacgggcagagatccaggagctggccatg
gttcctcgcatgattgtcacgccccaaagcaatcggcctgtcatgggtattgtgcaggac
acactgacagcagtgcgcaaattcaccaagagagatgtcttcctggagcggggtgaagtg
atgaacctcctgatgttcctgtcgacgtgggatgggaaggtcccacagccagccatccta
aagccccggcccctgtggacaggcaagcagatcttctccctcatcatacctggccacatc
aattgtatccgcacccacagcacccatcctgatgacgaagacagtggcccttacaagcat
atttctcctggggacaccaaggtggtggtggagaatggagagctgatcatgggcatcctg
tgtaagaagtctctgggcacgtcagctggctccctggtccacatctcctacctagagatg
ggtcatgacatcactcgcctcttctactccaacattcagactgtcattaacaactggctc
ctcatcgagggtcataccattggcattggggactccattgctgattctaagacttaccag
gacattcagaacactattaagaaggccaagcaggatgtaatagaggtcatcgagaaggca
cataacaatgagctggagcccaccccaggaaacactctgcggcagacttttgagaatcag
gtgaaccgcattcttaacgatgcccgagacaagactggctcctctgctcagaaatctttg
tctgaatacaacaatttcaagtctatggttgtgtccggagctaaaggttccaagattaac
atctcccaggtcattgctgtcgtcggccagcagaacgtggagggcaagcggattccattt
ggcttcaagcaccggactctgcctcacttcatcaaggatgactatgggcctgagagccgt
ggctttgtggagaactcctacctggccggcctcacacccaccgagttcttcttccatgcc
atggggggtcgtgaggggctcatcgacacagctgtgaagactgctgagactggatacatc
cagcggcggctgatcaagtccatggagtcagtgatggtgaagtacgacgcgactgtgcgg
aactccatcaaccaggtggtgcagctgcgctatggcgaggatggcctggcgggcgagagc
gttgagttccagaacctggctacgctgaagccttccaacaaggcttttgagaagaagttc
cgctttgattataccaatgagagggccctgcggcgcacgctgcaggaggacctggtgaag
gacgtgctgagcaatgcgcatatacagaatgagttggagcgggaatttgagcggatgcgg
gaggatcgggaggtgctcagggtcatcttcccaactggagacagcaaggtcgtcctcccc
tgtaacctgctgcgcatgatttggaatgctcagaaaatcttccacatcaacccgcgcctt
ccctctgacctgcaccccatcaaagtggtagagggagtcaaggaattgagcaagaagctg
gtgatcgtgaatggggatgacccactaagccgacaggcccaggaaaatgccacgctgctc
ttcaacattcacctgcgatccacattgtgttcccgccgcatggcggaggagtttcggctc
agtggagaggcctttgactggctgcttggggagattgagtccaagttcaaccaagccatt
gcccatcctggtgaaatggtgggagctctggctgcacagtcccttggagaacctgctacc
cagatgaccttgaacactttccactatgctggtgtgtctgccaagaatgtgacgctgggt
gtgccccgacttaaggagctcatcaacatttccaagaagccaaagaccccttcgcttact
gtcttcctgttgggccagtccgctcgagatgctgagagagccaaggatattctgtgccgc
ctggagcatacaacgttgaggaaagtgactgccaacacagccatctactatgaccccaac
ccccagagcacagtggtggcagaggatcaggaatgggtgaatgtctactacgagatgcct
gactttgatgtggcccgaatttccccctggctgttgcgggtggagctggatcgcaagcac
atgactgaccggaagctgaccatggagcagattgctgagaagatcaatgccggttttggc
gacgacttgaattgcatctttaatgatgacaatgcagagaagctggtgcttcgtattcgc
atcatgaacagcgatgagaacaagatgcaagaggaggaagaggtggtagacaagatggat
gatgacgtcttcctgcgttgcatcgagtccaacatgctgacagatatgaccctgcagggc
attgagcagatcagcaaggtatacatgcacttgccacagacagacaacaagaagaagatc
atcatcacggaggacggggagttcaaggccctgcaggagtggatcctggagacggacggc
gtgagcttgatgcgggtgctgagtgagaaggatgtggaccctgtgcgcaccacgtccaat
gacatcgtggagatcttcacggtgctgggcattgaagccgtgcggaaggccctggagcgg
gagctgtaccatgtcatctccttcgatggctcttatgtcaattaccgacacttggctttg
ttgtgtgataccatgacctgtcgcggtcacttgatggccatcacccgacacggagtcaac
cgccaggacacaggaccactcatgaagtgttcctttgaggaaacggtggacgtgcttatg
gaagcagccgcacacggcgagagcgaccccatgaagggggtttctgagaatatcatgctg
ggccagctggctccggccggcactggctgctttgacctcttgcttgatgcagagaagtgc
aagtatggcatggagatccccaccaatatccccggcctgggggctgctggacccaccggc
atgttctttgggtcagcacccagtcccatgggtggaatctctcctgccatgacgccttgg
aaccagggtgcaacccctgcctacggcgcctggtcccccagtgttgggagtggcatgact
ccaggggcagctggcttctctcccagtgctgcatctgatgccagcggcttcagcccgggt
tactcccctgcctggtctcccacaccaggctccccaggctccccaggtccctcaagcccc
tacatcccttcaccaggtggtgccatgtctcccagctactcaccgacgtcacctgcctat
gagccccgctctcctgggggctacacaccccagagtccctcttactcccccacttccccc
tcctactcccccacctctccatcctattctccaaccagtcccaactatagccccacatca
cccagctactccccaacatcacctagctactcaccaacctctcccagctattcgcccacc
tctcccagctactcacccacctctcccagctattcacccacctctcccagctactcaccc
acctcccctagctactcgcccacctctcccagctactcacccacctctcccagctactcg
ccgacatctcccagctactcaccaacttcccccagctattctcccacttcccccagctac
tcaccaacctctccaagctattcacctacctctcccagctactcacccacttctccaagt
tactcacccaccagcccgaactattctccaaccagtcccaattataccccaacatcaccc
agctacagcccaacatcacccagctattcacctaccagtcccaactacacacctaccagc
cctaactacagcccaacctctccaagctactctccaacgtcacccagctactccccaacc
tcaccaagttattccccttccagcccacgatacacaccacagtctccaacctatacccca
agctcgcccagctacagccccagctcgcccagctacagcccaacctcacccaagtacacc
ccaaccagtccttcctacagtcccagctccccagaatataccccaacttctcccaagtac
tcacctaccagtcccaaatactcacccacctctcccaagtactcacctaccagccccacc
tattcacccactaccccgaaatactccccaacttcccctacttactccccaacctctcca
gtctacaccccgacttcccccaagtactcacctactagccccacttactcgcccacttcc
cccaagtattcaccgaccagccccacctactcgcccacctccccgaaaggctctacctac
tctcctacttcccctggctactcacccaccagtcccacctacagcctcaccagcccggcc
atcagtccggatgacagtgacgaggagaactga
DBGET
integrated database retrieval system
