Cebus imitator (Panamanian white-faced capuchin): 108311344
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Entry
108311344 CDS
T08783
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
cimi
Cebus imitator (Panamanian white-faced capuchin)
Pathway
cimi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cimi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108311344 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cimi03041
]
108311344 (SF3B1)
03036 Chromosome and associated proteins [BR:
cimi03036
]
108311344 (SF3B1)
Spliceosome [BR:
cimi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
108311344 (SF3B1)
Complex B
108311344 (SF3B1)
Complex C
U2 SnRNP specific factors
108311344 (SF3B1)
Chromosome and associated proteins [BR:
cimi03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
108311344 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
108311344
NCBI-ProteinID:
XP_017394253
Ensembl:
ENSCCAG00000020506
UniProt:
A0A2K5PQ92
LinkDB
All DBs
Position
Unknown
AA seq
1304 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatattgaagcacagattcgagaaattcaaggc
aagaaggcagctcttgatgaagctcaaggagtgggcctcgattctacaggttattatgac
caggaaatttatggtggaagtgacagcagatttgctggatacgtgacatcaattgctgca
actgaacttgaagatgatgacgatgactattcatcatctacaagtttgcttggtcagaag
aagccaggatatcatgccccggtggcattgcttaatgatataccacagtcaacagaacag
tatgatccatttgctgagcaccgacctccaaagattgcagaccgggaagatgaatacaaa
aagcataggcggaccatgataatttccccagagcgtcttgatccttttgcagatggaggg
aagacccctgatcctaaaatgaatgcaaggacttacatggatgtaatgcgagaacagcac
ttgactaaagaagaacgagaaattaggcaacagctagcagaaaaagctaaagctggagaa
ctaaaagtcgtcaatggagcagcagcatcccagcctccgtcaaaacgaaaacggcgttgg
gatcagacagctgatcagactcctggtgccactcccaaaaagctatcaagttgggatcag
gcagagaccccggggcatactccttccttaagatgggatgagacaccaggtcgtgcaaag
ggaagtgagactcctggagcaacgccaggctcaaaaatatgggatcctacacctagtcac
acaccagcgggagctgctactcctggacgaggcgatacaccaggccatgccacaccaggc
catggaggtgcaacttccagcgctcgtaaaaacagatgggatgaaacccccaaaacagag
agagacactcctgggcatggaagtggatgggctgagactcctcgaacagatcgaggtgga
gattctattggtgaaacaccgactcctggagccagtaaaagaaaatcacggtgggatgaa
acaccagctagtcagatgggtggaagcactccagttctgacccctggaaaaacaccaatt
ggcacaccagccatgaacatggctacccctactccaggtcacataatgagtatgactcct
gaacagcttcaggcttggcggtgggaaagagaaattgatgagagaaatcgcccactttct
gatgaagaattagatgctatgttcccagaaggatacaaggtacttcctcctccagctggc
tatgttcctattcgaactccagctcgaaagctgacagctactccgacacctttgggtggt
atgactggtttccacatgcaaactgaagatcgaactatgaaaagtgttaatgaccagcca
tctggaaatcttccatttttaaaacctgatgatattcagtactttgataaactactggtt
gatgttgatgaatctacacttagtccagaagagcaaaaagagagaaaaataatgaagtta
cttttaaaaattaagaatggaacaccaccaatgagaaaggctgcattgcgtcagattact
gataaagctcgtgaatttggagctggtcctttgtttaatcagattcttcctctactgatg
tctcctacacttgaggatcaagagcgtcatttacttgtgaaagttattgacaggatactg
tacaaacttgatgacttggttcgtccttatgtgcataagatcctcgtggtcattgaaccg
ctattgattgatgaagattactacgctagagtggaaggccgagagatcatttctaatttg
gcaaaggctgctggtctggctactatgatctctaccatgagacctgatatagataacatg
gatgagtatgtccgtaacacaacagctcgagcttttgctgttgtggcctctgccctgggc
attccttctttattgcccttcttaaaagctgtgtgcaaaagcaagaagtcctggcaagcg
agacacactggtattaagattgtacaacagatagctattcttatgggctgtgccatcttg
ccacatcttagaagtttagttgaaatcattgaacatggtcttgtggatgagcagcagaag
gttcggaccatcagtgctttggccattgctgccttggctgaagcagcaactccttatggt
atcgaatcttttgattctgtcttaaagcctttatggaagggtatccgccaacacagagga
aagggtttagctgctttcttaaaggctattgggtatcttattcctctcatggatgcagaa
tatgccaactactatactagagaagtgatgttaatccttattcgagaattccaatctcct
gatgaggaaatgaagaaaattgtgctgaaggtggtaaaacagtgttgtgggacagatggt
gtggaagcaaactatattaaaacggagattcttcctccattttttaaacacttctggcag
cacaggatggctttggatagaagaaattaccgacaattagttgatacaactgtggagttg
gcaaacaaagtaggtgcagcagaaattatatccaggattgtggatgatctgaaggatgaa
gctgaacagtacagaaaaatggtgatggagacaattgagaaaattatgggcaatttggga
gcagcagatattgatcataaacttgaagaacaactgattgatggtattctttatgctttc
caagaacagactacagaggattcagtaatgttgaatggctttggcacagtggtgaatgct
cttggcaaacgagtcaaaccatacttgcctcagatctgtggtacagttttgtggcgttta
aataacaaatctgcaaaagttaggcaacaggcagctgacttgatttctcgaactgctgtt
gttatgaagacttgtcaagaggaaaaattgatgggacacttgggtgttgtattgtatgag
tatttgggtgaagagtaccctgaagtattgggcagcattctaggagccctgaaggccatt
gtaaatgtcataggtatgcataagatgactccaccaattaaagatctgctgcctagactc
acccccatcttaaagaacagacatgaaaaagtacaagagaattgtattgatcttgttggg
cgtattgctgacaggggagctgaatatgtgtctgcaagagaatggatgaggatttgcttt
gagcttttagagcttttaaaagcccacaaaaaagctattcgtagagccacagtcaacaca
tttggttatattgcaaaggccattggccctcacgatgtattggctacacttctaaacaac
ctcaaagttcaagaaaggcagaacagagtttgtaccaccgtagcaatagctattgttgca
gaaacgtgttcaccctttacagtactccctgccttaatgaatgaatacagagttcctgaa
ctgaatgttcaaaatggagtgttaaaatcactttccttcttgtttgaatatattggtgaa
atgggaaaagactacatttatgctgtaacaccattacttgaagatgctttaatggataga
gaccttgtacacagacagacggctagtgcggtggtacagcacatgtcacttggggtttat
ggatttggttgtgaagattcactgaatcacttgttgaactatgtatggccaaatgtgttt
gagacatctcctcatgtaattcaggcagttatgggagccctagagggcctgagagttgct
attggaccatgtagaatgttgcaatattgtttacagggtctgtttcacccagcccggaaa
gtcagagatgtatattggaaaatttacaactccatctacattggttcccaggacgctctc
atagcacattacccaagaatctacaacgatgataagaacacctatattcgttatgaactt
gattatatcttataa
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integrated database retrieval system
