Cebus imitator (Panamanian white-faced capuchin): 108311386
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Entry
108311386 CDS
T08783
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
cimi
Cebus imitator (Panamanian white-faced capuchin)
Brite
KEGG Orthology (KO) [BR:
cimi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cimi03021
]
108311386 (SCAF8)
03041 Spliceosome [BR:
cimi03041
]
108311386 (SCAF8)
Transcription machinery [BR:
cimi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108311386 (SCAF8)
Spliceosome [BR:
cimi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
108311386 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
108311386
NCBI-ProteinID:
XP_017394272
Ensembl:
ENSCCAG00000024952
UniProt:
A0A2K5QF68
LinkDB
All DBs
Position
Unknown
AA seq
1292 aa
AA seq
DB search
MEAVKTFNSEDCASTPACTDCFSSSMDTRSILYSLNDYKPPISKAKMTQITKAAIKAIKF
YKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNL
YRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTTAMSNTPG
TPVTPVTPANVVQGLPDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQP
SILQALDAGLVVQLQALTAQLTAAAAAANTLTPLEQGVSFNKKLMDRFDFGEDSEHSEEP
KKEIPTSQLSHVSESVNNSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKTTPQDSQEGTFG
SEHSASPSQGSSQQHFLEPEVNLDDSIDIQQQDMDIDEGQDGVEEEVFEQEAKKVAVRSR
SRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKER
QKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCM
VHRQDAFRALQKLSSGSYKIGSKIIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVD
DLEGFAEGGMIDQETVNTEWETVKSSEPVKEAVQTTQSPTPVEKETVVTTQAEVFPPPVA
MLQIPVAPAVPAVSLVPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPP
PVVPPPTIPPVVPTSLVQPSLSITPETVKDVGFGSLVIPGGSVASNLAASALPAGNVFSA
PTKQAEPEEKVPHLIDHQISSGENTRSVIPNDISSNAAILGGQPPNVTSNSGILGVQRPN
VSSNSEILGVRPSNVSSSSGIIGPQPPSILNNSGILGIQPPSVSSNSGLLGVLPPNIPNN
SGLVGVQPPNVPNTSGLLGTQPPAGPQNLPPLSIPNQRMPTIPMLDIRPGLIPQAPGPRF
PLIQPGLPPQRGIPPPSVLDAALHPPPRGPFPPGDIFSQPERPFLAPGRQSIDNATNPEK
RIPLGNDNIQQEGDRDYRFPPIETRESISRPPPVDVRDVVGRPIDPREGPGRPPLDGRDH
FGRPPVDIRENLVRPGIDHLGRRDHFGFNPEKPWGHRGDFDEREHRVLPVYGGPKGLHEE
RGRFRSGNYRFDPRSGPWNRGFGQEVHRDFDDRRRPWERQRDRDDRDFDFCREMNGNRLG
RDRIQNTWVPPPHARVFDYFEGATSQRKGDNVPQVNGENTERHAQPPPLPVQNDPELYEK
LTSSNEISKEKSDTVADIESEPVVESTETEGT
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaagaccttcaatagcgaggattgtgcctctactcctgcttgtacagac
tgcttttccagcagcatggacacaagaagcatattgtattccctgaatgactataaacca
cccatttctaaagcgaaaatgacccaaattactaaggcagccatcaaagctattaagttc
tataaacatgtggtacagagtgttgagaagtttattcagaaatgtaaaccagaatacaaa
gtacctggactttatgtaattgactccattgtgcgacagtcccgacatcagtttggtcaa
gaaaaggatgtgtttgcacccagatttagtaataacatcattagcactttccagaattta
tatcgttgccctggggatgacaagagtaaaatagtgagagtactaaacttatggcagaag
aataacgtatttaagagtgagattattcagccccttttggatatggcagccgggatccca
cctcctgttgtcacgcctgttttggccagcactaccactgctatgagcaatactccagga
actccagtgacacctgttaccccggccaatgtggtccaaggcttacctgatccgtgggta
tctcagataacaaatacagatacacttgcggctgtggctcagatcttgcaaagtcctcaa
ggccagcagcttcaacagttaatacaaaccttacagatacaacagcagaagccccagcct
tccattctgcaggctctggatgctggtcttgttgttcagttgcaagctcttacagcacaa
cttacagctgcagctgcggctgccaacactctcactcccttagaacagggagtctccttt
aacaagaagttgatggataggtttgattttggggaagattctgagcatagtgaagagccc
aaaaaggaaattccaacttcgcaactttctcacgtttcagaatctgtgaacaattccatt
tttcatcagatagcagaacaactacaacagcaaaatctggaacatctcagacagcagctc
ttggaacagcaacagcctcaaaagaccactcctcaggatagtcaggaaggaacatttggg
tcagagcattcagcgtcaccatcacaagggagtagtcagcagcattttcttgaacctgaa
gtcaatttggatgattccatagatattcagcagcaggatatggatatagatgaagggcaa
gatggagtggaagaggaggtctttgaacaagaagctaagaaagtggcggttcgctcaaga
tccagaacacattcacgttctcgttcaagatcaccaagaaaacgaaggtctaggtcacga
tctggttctagaaagcgtaaacacagaaagcgatcgcgttcccgctcaagagaaagaaag
agaaaatcatcacgatcgtattcaagtgaaaggagagccagagaaagagagaaagaacga
cagaaaaagggattacctccaattagatctaaaacattgagtgtatgtagtactactctc
tgggttgggcaagtggacaagaaggcaacacagcaagatttaaccaacctgtttgaagag
tttggacaaattgaatccattaatatgattcctcccaggggctgtgcgtacgtctgcatg
gttcatcgacaggatgcatttcgagctcttcagaaactcagttctggatcgtataaaatt
gggtccaagatcattaagatcgcatgggctttaaacaaaggtgtaaaaacagaatacaaa
caattctgggatgtggatcttggagttacatatataccatgggaaaaagttaaagtggat
gacttggaaggttttgcagaaggaggcatgattgatcaggagactgtaaatactgagtgg
gaaactgtgaaaagctcagaacctgttaaagaggcggtccagacaactcagagcccaact
ccagttgaaaaggagacagtggttacaacccaggcagaggttttccctcctcctgttgct
atgttgcagattccagtggcgccagctgtgcctgcagttagtttagtcccaccagcattt
cctgtgtcgatgccagttcctcctcctggattcagtccaatccctccacctcctttttta
cgagcaagttttaacccttcacaaccaccacctggttttatgccacctccagttccccca
cctgttgtgccaccccctacgattccaccagtagtaccaacatctttagtacagccatca
ttatccataaccccggaaactgtgaaagatgttggatttggtagccttgttataccaggc
ggttctgttgccagcaatcttgctgcttctgctctgccagctggaaatgtttttagtgct
ccaactaaacaagcagagcctgaagaaaaagtacctcatcttatagaccaccagatttct
tctggtgaaaacaccagatcagtgattccaaatgatatttcaagtaatgctgcaatttta
ggaggacagccgccaaatgtgacaagcaattctggaattctgggagtccaaagaccaaat
gtatcaagtaattctgaaattcttggggtccggccatctaatgtttccagtagttctggg
attattggaccccaaccaccaagtattctaaataactctggaattttgggaatacagcca
cccagtgtgtcaagtaattctggacttttgggagtgctacccccaaatatacctaacaat
tctggacttgtaggagtacagccaccaaatgttccaaatacttctggacttctgggaaca
cagccaccagccggacctcaaaacttaccccctttaagtatccctaatcaaaggatgccc
acaataccaatgttagacattcgtccaggactaataccacaggcacctgggccaagattc
cccttaatacagcctggacttccaccccaacggggaatcccacccccatcggtacttgat
gcagctcttcatccaccaccccgtggaccttttcctccaggagatatttttagtcagcct
gaaagaccttttctagctcctggaagacaaagtatagacaatgctactaacccagaaaaa
aggataccacttgggaatgataacattcaacaggaaggagatagagattaccggtttcct
cctatagaaaccagggaaagcattagtagacctccccctgtggatgttagagatgtggtt
gggcggcctatagatccaagagaaggtcctggacggcctccactagatggtagggatcat
tttggaagacctcctgtagatataagagagaatcttgtgaggccaggtatagatcatctt
ggtcgaagagaccactttggctttaatccagagaagccctgggggcatagaggagatttt
gatgagagagagcatcgggttctaccggtctatggtggtccaaaaggtttacatgaagaa
agaggtagatttcggtctggaaactatcgatttgatcctagaagtggtccttggaacaga
ggatttggacaagaagttcacagagattttgatgaccgcagaagaccctgggagaggcaa
agggatagggatgacagagattttgatttctgcagagaaatgaatggaaatcgtcttgga
cgagacagaattcaaaacacttgggtccctcctcctcatgctcgggttttcgattatttt
gaaggggccacttctcaacgaaaaggtgataatgtgcctcaggttaatggtgaaaataca
gagagacatgctcagccaccacctttaccagtacagaatgatcctgaactttatgaaaaa
ctgacatcttcaaatgaaataagcaaggagaagagtgacacagttgctgatatagaaagt
gaaccagtggtagaaagcacagaaactgaggggacataa
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